CK934672

Overview
NameCK934672
Unique NameCK934672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2568 contig Csv1_Contig2568:137..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934672 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.252e-42
Identity = 87/97 (89.69%), Postives = 87/97 (89.69%), Query Frame = 2
Query:  152 MARXXXXXXXXXXPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 442
            MAR          PVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          
BLAST of CK934672 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.203e-19
Identity = 53/104 (50.96%), Postives = 65/104 (62.50%), Query Frame = 2
Query:  152 MARXXXXXXXXXXPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 439
            MAR           + DG+ +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID AELREMLLNH+VR+
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          
BLAST of CK934672 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.962e-18
Identity = 51/104 (49.04%), Postives = 64/104 (61.54%), Query Frame = 2
Query:  152 MARXXXXXXXXXXPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 439
            MAR           V D + +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID A+LREM+LNH+VR+
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          
The following BLAST results are available for this feature:
BLAST of CK934672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI2.252e-4289.69Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI1.203e-1950.96Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI2.962e-1849.04Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004228_B10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIIF_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934672 ID=CK934672; Name=CK934672; organism=Citrus sinensis; type=EST; length=674bp
GGGGACAAGCACAGCACAAAGAGAGCGAGCCGCTAGCTTTTGCCTATAGC
TACTGCAGGAGCAGAATCTTTCTTCTTCTGTAGTAGCACTGTACAGAAAC
ATCCCAGCTAGCTATCTTCATATCTATTAAGTTCTATAAGTAAATAAAAC
AATGGCCCGCTTTCTCTTCAAAGCTAAGCTTCTTCTTGCTCCTGTTGCTG
ATGGCATCTCGCTCTCCATTAGCAGGAGAGGATATGCTGCAGCAGCACCC
TTGGGGACCATATCTCGGACTGGTATCATGGAGAAAAATGATTTGAGGCC
TGCGGTGAGAGAGGATTCTGGGGCCTCTTCTGCCTGGGCCCCAGATCCCA
TCACTGGGTACTACAGGCCGGAGAATCGGGCGGTCGAGATTGATCCAGCA
GAGCTTCGAGAGATGCTGTTGAACCACAAAGTCAGGGCACACTAGGGAGT
GGTGGCGCATAGCAGCAGATCCTTTGCTGTTAGCGGTGCTTTAACTTTTT
AAGTGATGTTGTTACAGTAGCAATTTTGACTCACTCTTAAGTCTTTGCTG
TTGTATTGATATCAACTGTTATTGACAACTTTTAATAGTGCATTTCCATG
ATTTTGTCTATTAACTTGTCAATAAAAGTAAAGAATTCCTGTATTACAAA
AAAAAAAAAAAAAAAAAAAAAAAA
back to top