CK935195

Overview
NameCK935195
Unique NameCK935195
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length371
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9274 contig Csv1_Contig9274:1359..1729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935195 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.700e-23
Identity = 49/63 (77.78%), Postives = 55/63 (87.30%), Query Frame = 3
Query:    3 VQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 191
            VQLA+ YLS+AALG+AN DAI  G FYGK AQQ+N+PVPEGCTDP AENFDPTARSDDG+C Y
Sbjct:  410 VQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVY 472          
BLAST of CK935195 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 6.460e-23
Identity = 49/65 (75.38%), Postives = 59/65 (90.77%), Query Frame = 3
Query:    3 VQLADKYLSEAALGEANEDAIQSGNFYGKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQYT 194
            VQLA++YLSEAALG+AN DA+++G+FYG+ AQQ  N+PVPEGCTDP A+NFDPTARSDDGSC YT
Sbjct:  401 VQLAEQYLSEAALGDANSDAMKTGSFYGQGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSCLYT 465          
BLAST of CK935195 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.880e-22
Identity = 46/64 (71.88%), Postives = 57/64 (89.06%), Query Frame = 3
Query:    3 VQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYT 194
            VQLAD Y+S+AALG+AN+DA+++G+FYGK AQQ  +PVPEGCTD  A+N+DPTARSDDGSC YT
Sbjct:  400 VQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYT 463          
BLAST of CK935195 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 2.455e-22
Identity = 46/65 (70.77%), Postives = 57/65 (87.69%), Query Frame = 3
Query:    3 VQLADKYLSEAALGEANEDAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 197
            VQLAD+Y+S AALG+AN+DAI  G F+GKAAQQ+++PV +GCTDP A+N+DPTARSDDGSC Y L
Sbjct:  408 VQLADQYMSSAALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472          
BLAST of CK935195 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.469e-22
Identity = 51/65 (78.46%), Postives = 57/65 (87.69%), Query Frame = 3
Query:    3 VQLADKYLSEAALGEANEDAIQSGNFYG-KAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQY 191
            VQLADKY+SEAALG+AN DAI+ G FYG +AAQQ+ NVPVPEGCTDP A N+DPTARSDDGSC Y
Sbjct:  410 VQLADKYMSEAALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVY 474          
The following BLAST results are available for this feature:
BLAST of CK935195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RCA_ARATH1.700e-2377.78Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ6.460e-2375.38Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU1.880e-2271.88Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL2.455e-2270.77Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR5.469e-2278.46Ribulose bisphosphate carboxylase/oxygenase activa... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004564_G06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIIF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935195 ID=CK935195; Name=CK935195; organism=Citrus sinensis; type=EST; length=371bp
GGGTTCAGTTGGCTGACAAGTATTTGAGTGAGGCCGCTCTTGGTGAAGCT
AATGAAGATGCTATTCAGAGTGGAAATTTCTATGGCAAAGCAGCCCAGCA
AATGAATGTTCCAGTTCCTGAAGGATGTACTGATCCTACCGCAGAAAACT
TTGATCCAACTGCAAGAAGTGATGATGGAAGCTGCCAATACACGCTTTAG
GCCTTGTTTCTAAGGGTTGAGAAGTGTCGCACTTTGCTTAGGATGTGAGA
TATTCAAATAATATTGTTGCATTTTCATTTCTTTTTTAATCAGAAAGAAT
CCTCTAATTTTGTGTTATATCACAACTCTTTATTCGATCTTCAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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