CK935213

Overview
NameCK935213
Unique NameCK935213
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1776 contig Csv1_Contig1776:1..870. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935213 vs. ExPASy Swiss-Prot
Match: F10AL_ARATH (FAM10 family protein At4g22670 OS=Arabidopsis thaliana GN=At4g22670 PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 9.100e-51
Identity = 99/146 (67.81%), Postives = 115/146 (78.77%), Query Frame = 3
Query:  174 DVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRIQ 611
            D +EPDNDP QKMGD SVEVT+E R+AA   K KA++ +SEG  ++AI  LT AI LNPTSAI+Y  RA VY+KL KPNAAIRDA  ALE NPDSAKGYK RGMARA LG+W EAA DLH+AS +DYDEEI   LKKVEPNA +++
Sbjct:   96 DTVEPDNDPPQKMGDSSVEVTDENREAAQEAKGKAMEALSEGNFDEAIEHLTRAITLNPTSAIMYGNRASVYIKLKKPNAAIRDANAALEINPDSAKGYKSRGMARAMLGEWAEAAKDLHLASTIDYDEEISAVLKKVEPNAHKLE 241          
BLAST of CK935213 vs. ExPASy Swiss-Prot
Match: F10A1_CHICK (Hsc70-interacting protein OS=Gallus gallus GN=ST13 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.720e-41
Identity = 86/147 (58.50%), Postives = 108/147 (73.47%), Query Frame = 3
Query:  168 NTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRI 608
            N  V+EPDND  Q+MGD +VEVTEEM D AN  K++A++ +SEG L+ A+   T+AI LNP  AILYA RA V+VKL KPNAAIRD   A++ NPDSA+ YK RG A   LG WEEAA+DL +A KLDYDE+    LK+V+P A++I
Sbjct:   83 NEGVIEPDNDDPQEMGDENVEVTEEMMDQANEKKMEAINALSEGDLQKAVNLFTDAIKLNPCLAILYAKRASVFVKLQKPNAAIRDCDRAIKINPDSAQTYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQPRAQKI 229          
BLAST of CK935213 vs. ExPASy Swiss-Prot
Match: F10A5_HUMAN (Protein FAM10A5 OS=Homo sapiens GN=FAM10A5 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.103e-39
Identity = 82/144 (56.94%), Postives = 106/144 (73.61%), Query Frame = 3
Query:  177 VMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRI 608
            V+EPD D  Q+MGD +VE+TEEM D AN  K+ A++++++G+L+ AI   T+AI LNP  AILYA RA V+VKL KPNAAI+D   A+E NPDSA+ YK RG A   LG WEEAA+DL  A KLDYDE+    LK+V+P A++I
Sbjct:   88 VIEPDTDAPQEMGDENVEITEEMMDQANDKKVAAIEVLNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIQDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLAFACKLDYDEDASAMLKEVQPRAQKI 231          
BLAST of CK935213 vs. ExPASy Swiss-Prot
Match: F10A1_PONAB (Hsc70-interacting protein OS=Pongo abelii GN=ST13 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.103e-39
Identity = 82/144 (56.94%), Postives = 105/144 (72.92%), Query Frame = 3
Query:  177 VMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRI 608
            V+EPD D  Q+MGD + E+TEEM D AN  K+ A++ +++G+L+ AI   T+AI LNP  AILYA RA V+VKL KPNAAIRD   A+E NPDSA+ YK RG A   LG WEEAA+DL +A KLDYDE+    LK+V+P A++I
Sbjct:   88 VIEPDTDAPQEMGDENAEITEEMMDQANDKKVAAIEALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQPKAQKI 231          
BLAST of CK935213 vs. ExPASy Swiss-Prot
Match: F10A1_HUMAN (Hsc70-interacting protein OS=Homo sapiens GN=ST13 PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 2.103e-39
Identity = 82/144 (56.94%), Postives = 105/144 (72.92%), Query Frame = 3
Query:  177 VMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRI 608
            V+EPD D  Q+MGD + E+TEEM D AN  K+ A++ +++G+L+ AI   T+AI LNP  AILYA RA V+VKL KPNAAIRD   A+E NPDSA+ YK RG A   LG WEEAA+DL +A KLDYDE+    LK+V+P A++I
Sbjct:   88 VIEPDTDAPQEMGDENAEITEEMMDQANDKKVAAIEALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQPRAQKI 231          
BLAST of CK935213 vs. ExPASy Swiss-Prot
Match: F10A1_MOUSE (Hsc70-interacting protein OS=Mus musculus GN=St13 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.685e-39
Identity = 82/147 (55.78%), Postives = 105/147 (71.43%), Query Frame = 3
Query:  168 NTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRI 608
            N  V+EPD D  Q+MGD + E+TEEM D AN  K  A++ +++G+L+ AI   T+AI LNP  AILYA RA V+VKL KPNAAIRD   A+E NPDSA+ YK RG A   LG WEEAA+DL +A KLDYDE+    L++V+P A++I
Sbjct:   84 NEGVIEPDTDAPQEMGDENAEITEEMMDEANEKKGAAIEALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLREVQPRAQKI 230          
BLAST of CK935213 vs. ExPASy Swiss-Prot
Match: F10A4_HUMAN (Protein FAM10A4 OS=Homo sapiens GN=FAM10A4 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.780e-38
Identity = 80/144 (55.56%), Postives = 104/144 (72.22%), Query Frame = 3
Query:  177 VMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRI 608
            V+EPD D  Q+MGD + E+TEE+ D AN  K+ A++ +++G+L+ AI   T+AI LNP  AILYA RA V+VKL KPNAAIRD   A+E NPDSA+ YK RG A   LG WEEAA+DL +A K DYDE+    LK+V+P A++I
Sbjct:   84 VIEPDTDAPQEMGDENAEITEEVMDQANDKKVAAIEALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKRRGKAHRLLGHWEEAAHDLALACKFDYDEDASAMLKEVQPRAQKI 227          
BLAST of CK935213 vs. ExPASy Swiss-Prot
Match: F10A1_RAT (Hsc70-interacting protein OS=Rattus norvegicus GN=St13 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.835e-38
Identity = 81/147 (55.10%), Postives = 102/147 (69.39%), Query Frame = 3
Query:  168 NTDVMEPDNDPSQKMGDPSVEVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRI 608
            N  V+E D D  Q+MGD + E+TE M D AN  K  A+D +++G+L+ AI   T+AI LNP  AILYA RA V+VKL KPNAAIRD   A+E NPDSA+ YK RG A   LG WEEAA DL +A KLDYDE+    L++V+P A++I
Sbjct:   84 NEGVIEADTDAPQEMGDENAEITEAMMDEANEKKGAAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAARDLALACKLDYDEDASAMLREVQPRAQKI 230          
BLAST of CK935213 vs. ExPASy Swiss-Prot
Match: HRP_PLABE (58 kDa phosphoprotein OS=Plasmodium berghei PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.123e-16
Identity = 47/127 (37.01%), Postives = 69/127 (54.33%), Query Frame = 3
Query:  228 EVTEEMRDAANMTKLKAVDLISEGKLEDAIGQLTEAIMLNPTSAILYAARAGVYVKLNKPNAAIRDAYVALETNPDSAKGYKIRGMARARLGQWEEAANDLHVASKLDYDEEIGMALKKVEPNARRI 608
            E++EE  +     K +AVDL+   K E+A+ +  + I     SA++Y  RA + + L +P A IRD   AL  N DSA  YKIR  A   LG+WE A  D+    K+DYDE +    K ++   ++I
Sbjct:  104 ELSEEQIEEICKLKEEAVDLVENKKYEEALEKYNKIISFGNPSAMIYTKRASILLNLKRPKACIRDCTEALNLNVDSANAYKIRAKAYRYLGKWEFAHADMEQGQKIDYDENLWDMQKLIQEKYKKI 230          
The following BLAST results are available for this feature:
BLAST of CK935213 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
F10AL_ARATH9.100e-5167.81FAM10 family protein At4g22670 OS=Arabidopsis thal... [more]
F10A1_CHICK1.720e-4158.50Hsc70-interacting protein OS=Gallus gallus GN=ST13... [more]
F10A5_HUMAN2.103e-3956.94Protein FAM10A5 OS=Homo sapiens GN=FAM10A5 PE=1 SV... [more]
F10A1_PONAB2.103e-3956.94Hsc70-interacting protein OS=Pongo abelii GN=ST13 ... [more]
F10A1_HUMAN2.103e-3956.94Hsc70-interacting protein OS=Homo sapiens GN=ST13 ... [more]
F10A1_MOUSE4.685e-3955.78Hsc70-interacting protein OS=Mus musculus GN=St13 ... [more]
F10A4_HUMAN1.780e-3855.56Protein FAM10A4 OS=Homo sapiens GN=FAM10A4 PE=1 SV... [more]
F10A1_RAT8.835e-3855.10Hsc70-interacting protein OS=Rattus norvegicus GN=... [more]
HRP_PLABE1.123e-1637.0158 kDa phosphoprotein OS=Plasmodium berghei PE=1 S... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004564_E10 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIIF_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935213 ID=CK935213; Name=CK935213; organism=Citrus sinensis; type=EST; length=870bp
GGGGACTGCAAATCAAAATCAATACCTTTTTTCAAGTCCTATCTTCATAG
AAAGAGGATAAAAGTGGTGTTGACATGTCCGACTCTGTTAAGCATTTTGA
AGCAATGAAGTCCAATTTATCAACTGAAGATGATGACGACATTGTGGAGT
CTGATATTGAGTTGGATAATACTGATGTTATGGAGCCCGACAATGATCCT
TCACAAAAGATGGGAGACCCGTCAGTTGAAGTTACGGAAGAAATGCGTGA
TGCAGCAAATATGACAAAACTAAAAGCAGTAGATTTGATCTCTGAAGGCA
AGTTGGAGGATGCCATAGGACAACTAACAGAAGCCATAATGTTGAATCCT
ACTTCAGCAATACTTTATGCAGCTCGAGCTGGTGTCTATGTTAAACTAAA
CAAACCTAATGCTGCAATCCGCGATGCTTATGTAGCTTTAGAGACTAACC
CTGACTCAGCAAAAGGATATAAAATACGTGGGATGGCAAGGGCCAGGTTG
GGCCAGTGGGAAGAAGCTGCAAATGATTTGCATGTGGCATCAAAGTTAGA
CTACGATGAGGAGATTGGCATGGCACTCAAGAAGGTTGAACCTAATGCTC
GTAGAATTCAAGAACATCGAAGAAAATATGAACGGCTGCGTAAAGAAAGG
GAGCTAAAAAATTTTGAACGTGAGAGGCAAAGAAAACAAGCTGGAGCCGA
TCGAGAAGCTTTGTCTGGTTTAAGGGATGGGCAAGTAATGGGTATTCACT
CAGCTAGTGAATTTGAAACTAAGTTGAATGCTGCTACTAGAGCATTGCGC
CTGGTGATTCTGTACTTTACTGCAACATGGTGCGGGCCCTGCCGTTTCAT
TTCTCCTCTTTTTACAAACT
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