CK935218

Overview
NameCK935218
Unique NameCK935218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935218_ssr828 microsatellite CK935218_ssr828:828..841. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9272 contig Csv1_Contig9272:1..890. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935218 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.269e-18
Identity = 45/61 (73.77%), Postives = 45/61 (73.77%), Query Frame = 3
Query:  108 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPT 290
            EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDT                GAKAKTNFPT
Sbjct:   22 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFPT 82          
BLAST of CK935218 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.225e-18
Identity = 42/64 (65.62%), Postives = 45/64 (70.31%), Query Frame = 3
Query:  108 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTPNE 299
            E+ +RGVRKRPWGRYAAEIRDPGKKTRVWLGTFDT                G+KAKTNFP P E
Sbjct:   30 EVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPLPGE 93          
BLAST of CK935218 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.225e-18
Identity = 42/64 (65.62%), Postives = 45/64 (70.31%), Query Frame = 3
Query:  108 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTPNE 299
            E+ YRGVRKRPWGRYAAEIRDPGKK+RVWLGTFDT                G KAKTNFP+P E
Sbjct:   24 EVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPSPTE 87          
BLAST of CK935218 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.074e-17
Identity = 42/64 (65.62%), Postives = 45/64 (70.31%), Query Frame = 3
Query:  108 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTPNE 299
            E+ YRGVRKRPWGRYAAEIRDPGKK+RVWLGTFDT                G KAKTNFP P+E
Sbjct:   24 EVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPLPSE 87          
BLAST of CK935218 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.094e-17
Identity = 41/62 (66.13%), Postives = 43/62 (69.35%), Query Frame = 3
Query:  108 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTP 293
            E+ YRGVRKRPWGRYAAEIRDP KKTRVWLGTFDT                G KAKTNFP+P
Sbjct:    9 EVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFPSP 70          
BLAST of CK935218 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.513e-16
Identity = 41/62 (66.13%), Postives = 43/62 (69.35%), Query Frame = 3
Query:  111 IRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTPN 296
            +RYRGVRKRPWGRYAAEIRDP KK+RVWLGTFDT                GAKAKTNFP  N
Sbjct:   18 VRYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFPCYN 79          
BLAST of CK935218 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.698e-16
Identity = 40/62 (64.52%), Postives = 43/62 (69.35%), Query Frame = 3
Query:  108 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTP 293
            EIR+RGVRKRPWGR+AAEIRDP KKTRVWLGTFD+                G KAKTNFP P
Sbjct:   25 EIRFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARALRGPKAKTNFPLP 86          
BLAST of CK935218 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.005e-15
Identity = 41/59 (69.49%), Postives = 41/59 (69.49%), Query Frame = 3
Query:  108 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNF 284
            EIRYRGVRKRPWGRYAAEIRDP KKTRVWLGTFDT                G KAKTNF
Sbjct:   28 EIRYRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNF 86          
BLAST of CK935218 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.452e-14
Identity = 38/60 (63.33%), Postives = 41/60 (68.33%), Query Frame = 3
Query:  108 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 287
            EIR+RGVRKRPWGR+AAEIRDP KK RVWLGTFD+                G KAKTNFP
Sbjct:   25 EIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFP 84          
BLAST of CK935218 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.224e-14
Identity = 38/60 (63.33%), Postives = 41/60 (68.33%), Query Frame = 3
Query:  108 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 287
            E RYRGVRKRPWGR+AAEIRDP KK+RVWLGTFD+                G KAKTNFP
Sbjct:   24 EPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFP 83          
The following BLAST results are available for this feature:
BLAST of CK935218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ERF78_ARATH1.269e-1873.77Ethylene-responsive transcription factor 4 OS=Arab... [more]
ERF80_ARATH8.225e-1865.63Ethylene-responsive transcription factor 9 OS=Arab... [more]
ERF4_TOBAC8.225e-1865.63Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF4_NICSY1.074e-1765.63Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF81_ARATH9.094e-1766.13Ethylene-responsive transcription factor 12 OS=Ara... [more]
ERF76_ARATH4.513e-1666.13Ethylene-responsive transcription factor 11 OS=Ara... [more]
ERF3_TOBAC7.698e-1664.52Ethylene-responsive transcription factor 3 OS=Nico... [more]
ERF79_ARATH1.005e-1569.49Ethylene-responsive transcription factor 8 OS=Arab... [more]
ERF82_ARATH1.452e-1463.33Ethylene-responsive transcription factor 3 OS=Arab... [more]
ERF83_ARATH4.224e-1463.33Ethylene-responsive transcription factor 7 OS=Arab... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004564_D11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIIF_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935218 ID=CK935218; Name=CK935218; organism=Citrus sinensis; type=EST; length=899bp
GCGGGGCTTCAAGAGCTAACAAACAACTTGCNNNTCTGTTCAAAATGGCT
CCGAGAGATAAGCTCAACAAACCATCCTCTAACCCGAATCCGAATTCGAA
GGATATGGAGATCCGATACAGAGGAGTGAGGAAGCGGCCGTGGGGGCGTT
ACGCCGCCGAGATCCGGGACCCGGGGAAGAAAACCCGCGTCTGGCTCGGC
ACCTTCGACACCGCCGAGGAAGCAGCACGTGCCTACGACGCAGCAGCGCG
TGAGTTCCGCGGCGCCAAAGCCAAGACAAACTTCCCAACGCCAAACGAAA
TCCTTGGCACCCTCGCCCGCAGCCCCAGCCAGAGCAGCACCGTGGAGTCA
TCCTCTCCTCCTCCGCCGACGCTGCTGCCACAGCCACAGCCGCTGCCACA
GCTAAACCTAGCTCTCAACAGCTACCGTAATGCCGGCGCGTGCCTCCCAG
TCGCCACGGCGCGTCCGGTCCTTTTCTTCGACGTTTTCTCCTCCGGTGGT
ACTGTTGCGACTCACCGTGATGCACGCTGTGTTGGTTTTTATCCCGGCGG
GACCCAGAGCGACTCCGATTCGTCATCGGTCGTCGTTGATTACGATCCTC
GTTCGTCTGAGAGAAGATTGATTGATCTTGATCTTGATCTTAATCTCCCT
CCTCCACCTGAAGTGGCTTGAGTTTTTGGACTGAAGCTAATGCTGACGTG
TACGGCGATGGTGATGTGTATATAGTGACCCTAGCAAGATCCTTTGGTCG
ATCTTCGTATTTTTGTTTTTGCAACTGGAAAATCTAGGACGGTTACTCCA
CGTTGTTTTTAACTGCTGCCGTTAGAAATATATATATATATGTGTTTAAT
GCTTAGTCAAATGATATAAGAGAAGTGAGAACCCTTTTTTGAAAAAAAA
back to top