CK935219
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK935219 vs. ExPASy Swiss-Prot
Match: SMD2_DROME (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=snRNP2 PE=1 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 2.056e-40 Identity = 79/88 (89.77%), Postives = 84/88 (95.45%), Query Frame = 1 Query: 145 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCDMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 408 TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHC+MVLENV+EMWTELP+TGKGKKK PVNKDRFISKMFLRGDSVI+VLRNP Sbjct: 25 TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112
BLAST of CK935219 vs. ExPASy Swiss-Prot
Match: SMD2_MOUSE (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2 PE=2 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 7.813e-40 Identity = 77/88 (87.50%), Postives = 85/88 (96.59%), Query Frame = 1 Query: 145 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCDMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 408 TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHC+MVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP Sbjct: 26 TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
BLAST of CK935219 vs. ExPASy Swiss-Prot
Match: SMD2_HUMAN (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2 PE=1 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 7.813e-40 Identity = 77/88 (87.50%), Postives = 85/88 (96.59%), Query Frame = 1 Query: 145 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCDMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 408 TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHC+MVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP Sbjct: 26 TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
BLAST of CK935219 vs. ExPASy Swiss-Prot
Match: SMD2_BOVIN (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 7.813e-40 Identity = 77/88 (87.50%), Postives = 85/88 (96.59%), Query Frame = 1 Query: 145 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCDMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 408 TGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHC+MVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP Sbjct: 26 TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
BLAST of CK935219 vs. ExPASy Swiss-Prot
Match: SMD2_DICDI (Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum GN=snrpd2 PE=3 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.629e-37 Identity = 74/87 (85.06%), Postives = 82/87 (94.25%), Query Frame = 1 Query: 148 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCDMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 408 GPLS+LM SV NNTQVLIN RNNKKLLGRVRAFDRHC+MVLENV+E+WTE+PKT KGKKKA P+NKDRFISKMFLRGDSVI+VL+NP Sbjct: 18 GPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILVLKNP 104
BLAST of CK935219 vs. ExPASy Swiss-Prot
Match: SMD2_CAEEL (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans GN=snr-4 PE=1 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.379e-36 Identity = 73/87 (83.91%), Postives = 81/87 (93.10%), Query Frame = 1 Query: 148 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCDMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 408 GPLS+L SVKNN QVLINCRNNKKLLGRV+AFDRHC+MVLENV+EMWTE+PKTGKGKKKA V KDRFISKMFLRGDSVI+V++NP Sbjct: 27 GPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113
BLAST of CK935219 vs. ExPASy Swiss-Prot
Match: SMD2_SCHPO (Probable small nuclear ribonucleoprotein Sm D2 OS=Schizosaccharomyces pombe GN=smd2 PE=2 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.382e-28 Identity = 62/87 (71.26%), Postives = 72/87 (82.76%), Query Frame = 1 Query: 148 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCDMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 408 GPLSVL +VKN+ QVLINCRNNKKLL RV+AFDRH +MVLENV+EMWTE +T G KK +NKDRFISKMFLRGD V++V+R P Sbjct: 28 GPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASG-KKGKAINKDRFISKMFLRGDGVVLVVRIP 113
BLAST of CK935219 vs. ExPASy Swiss-Prot
Match: SMD2_YEAST (Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces cerevisiae GN=SMD2 PE=1 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 2.364e-20 Identity = 47/87 (54.02%), Postives = 66/87 (75.86%), Query Frame = 1 Query: 148 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCDMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 408 GP+S++ ++ T V+I+ RNN K++ RV+AFDRHC+MVLENV+E+WTE KK +N++RFISK+FLRGDSVI+VL+ P Sbjct: 29 GPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE-------KKGKNVINRERFISKLFLRGDSVIVVLKTP 108 The following BLAST results are available for this feature:
BLAST of CK935219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CK935219 ID=CK935219; Name=CK935219; organism=Citrus sinensis; type=EST; length=769bpback to top |