CK935224
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK935224 vs. ExPASy Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 1.695e-37 Identity = 84/225 (37.33%), Postives = 134/225 (59.56%), Query Frame = 3 Query: 147 KCCFGVLQVEYLGHLISLVGVAVDPKKIQTVLEWPIPSSTKEVRGFLRLASYYRKFIRGFGGIATPLTRLLTKEGFHWTS--EAESAFTQLKHALTSPHVLRLQDFSQPFVVECDACGVGIGAISSQNDKPVAFFSEALQGSMLVLPTCEKEMLAIVKAIRKWRPYLLGKPFIVRTDQKSLKFLMEQRITTMAQT*WLPKILGYDYTIQCKKRSENRGADALSRL 815 KC F + +LGH+++ G+ +P+KI+ + ++PIP+ KE++ FL L YYRKFI F IA P+T+ L K T+ E +SAF +LK+ ++ +L++ DF++ F + DA V +GA+ SQ+ P+++ S L + T EKE+LAIV A + +R YLLG+ F + +D + L +L + T W K+ +D+ I+ K EN ADALSR+ Sbjct: 400 KCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRI 624 HSP 2 Score: 24.2534 bits (51), Expect = 1.695e-37 Identity = 14/45 (31.11%), Postives = 24/45 (53.33%), Query Frame = 1 Query: 34 LVFFNDILVYSKTWADHIFHLKTVLQILSDNSLFKKNQSVVLEFC 168 LV+ +DI+V+S + +H+ L V + L K N + L+ C Sbjct: 362 LVYLDDIIVFSTSLDEHLQSLGLVFE-----KLAKANLKLQLDKC 401
BLAST of CK935224 vs. ExPASy Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 8.283e-37 Identity = 83/225 (36.89%), Postives = 126/225 (56.00%), Query Frame = 3 Query: 147 KCCFGVLQVEYLGHLISLVGVAVDPKKIQTVLEWPIPSSTKEVRGFLRLASYYRKFIRGFGGIATPLTRLLTKEGFHWTSEAE--SAFTQLKHALTSPHVLRLQDFSQPFVVECDACGVGIGAISSQNDKPVAFFSEALQGSMLVLPTCEKEMLAIVKAIRKWRPYLLGKPFIVRTDQKSLKFLMEQRITTMAQT*WLPKILGYDYTIQCKKRSENRGADALSRL 815 KC F + +LGH+++ G+ +P K++ ++ +PIP+ KE+R FL L YYRKFI + IA P+T L K T + E AF +LK + +L+L DF + FV+ DA + +GA+ SQN P++F S L L EKE+LAIV A + +R YLLG+ F++ +D + L++L + W ++ Y + I K EN ADALSR+ Sbjct: 399 KCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSVADALSRI 623 HSP 2 Score: 26.1794 bits (56), Expect = 8.283e-37 Identity = 10/33 (30.30%), Postives = 22/33 (66.67%), Query Frame = 1 Query: 34 LVFFNDILVYSKTWADHIFHLKTVLQILSDNSL 132 LV+ +DI+++S + +H+ ++ V L+D +L Sbjct: 361 LVYLDDIIIFSTSLTEHLNSIQLVFTKLADANL 393
BLAST of CK935224 vs. ExPASy Swiss-Prot
Match: RTF21_SCHPO (Retrotransposable element Tf2 155 kDa protein type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 1.456e-32 Identity = 84/236 (35.59%), Postives = 125/236 (52.97%), Query Frame = 3 Query: 141 KSKCCFGVLQVEYLGHLISLVGVAVDPKKIQTVLEWPIPSSTKEVRGFLRLASYYRKFIRGFGGIATPLTRLLTKE-GFHWTSEAESAFTQLKHALTSPHVLRLQDFSQPFVVECDACGVGIGAISSQ---NDK--PVAFFSEALQGSMLVLPTCEKEMLAIVKAIRKWRPYLLG--KPFIVRTDQKSL--KFLMEQRITTMAQT*WLPKILGYDYTIQCKKRSENRGADALSRLV 818 ++KC F QV+++G+ IS G + I VL+W P + KE+R FL +Y RKFI + PL LL K+ + WT A +K L SP VLR DFS+ ++E DA V +GA+ SQ +DK PV ++S + + L +KEMLAI+K+++ WR YL +PF + TD ++L + E W + +++ I + S N ADALSR+V Sbjct: 598 QAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIV 833 HSP 2 Score: 33.4982 bits (75), Expect = 1.456e-32 Identity = 14/36 (38.89%), Postives = 26/36 (72.22%), Query Frame = 1 Query: 25 SQFLVFFNDILVYSKTWADHIFHLKTVLQILSDNSL 132 S + + +DIL++SK+ ++H+ H+K VLQ L + +L Sbjct: 559 SHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANL 594
BLAST of CK935224 vs. ExPASy Swiss-Prot
Match: RTF23_SCHPO (Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 5.454e-32 Identity = 84/236 (35.59%), Postives = 125/236 (52.97%), Query Frame = 3 Query: 141 KSKCCFGVLQVEYLGHLISLVGVAVDPKKIQTVLEWPIPSSTKEVRGFLRLASYYRKFIRGFGGIATPLTRLLTKE-GFHWTSEAESAFTQLKHALTSPHVLRLQDFSQPFVVECDACGVGIGAISSQ---NDK--PVAFFSEALQGSMLVLPTCEKEMLAIVKAIRKWRPYLLG--KPFIVRTDQKSL--KFLMEQRITTMAQT*WLPKILGYDYTIQCKKRSENRGADALSRLV 818 ++KC F QV+++G+ IS G + I VL+W P + KE+R FL +Y RKFI + PL LL K+ + WT A +K L SP VLR DFS+ ++E DA V +GA+ SQ +DK PV ++S + + L +KEMLAI+K+++ WR YL +PF + TD ++L + E W + +++ I + S N ADALSR+V Sbjct: 598 QAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIV 833 HSP 2 Score: 31.5722 bits (70), Expect = 5.454e-32 Identity = 13/36 (36.11%), Postives = 26/36 (72.22%), Query Frame = 1 Query: 25 SQFLVFFNDILVYSKTWADHIFHLKTVLQILSDNSL 132 S + + ++IL++SK+ ++H+ H+K VLQ L + +L Sbjct: 559 SHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANL 594
BLAST of CK935224 vs. ExPASy Swiss-Prot
Match: RTF22_SCHPO (Retrotransposable element Tf2 155 kDa protein type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 5.454e-32 Identity = 84/236 (35.59%), Postives = 125/236 (52.97%), Query Frame = 3 Query: 141 KSKCCFGVLQVEYLGHLISLVGVAVDPKKIQTVLEWPIPSSTKEVRGFLRLASYYRKFIRGFGGIATPLTRLLTKE-GFHWTSEAESAFTQLKHALTSPHVLRLQDFSQPFVVECDACGVGIGAISSQ---NDK--PVAFFSEALQGSMLVLPTCEKEMLAIVKAIRKWRPYLLG--KPFIVRTDQKSL--KFLMEQRITTMAQT*WLPKILGYDYTIQCKKRSENRGADALSRLV 818 ++KC F QV+++G+ IS G + I VL+W P + KE+R FL +Y RKFI + PL LL K+ + WT A +K L SP VLR DFS+ ++E DA V +GA+ SQ +DK PV ++S + + L +KEMLAI+K+++ WR YL +PF + TD ++L + E W + +++ I + S N ADALSR+V Sbjct: 598 QAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIV 833 HSP 2 Score: 31.5722 bits (70), Expect = 5.454e-32 Identity = 13/36 (36.11%), Postives = 26/36 (72.22%), Query Frame = 1 Query: 25 SQFLVFFNDILVYSKTWADHIFHLKTVLQILSDNSL 132 S + + ++IL++SK+ ++H+ H+K VLQ L + +L Sbjct: 559 SHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANL 594
BLAST of CK935224 vs. ExPASy Swiss-Prot
Match: POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=4 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 6.896e-32 Identity = 82/236 (34.75%), Postives = 121/236 (51.27%), Query Frame = 3 Query: 147 KCCFGVLQVEYLGHLISLVGVAVDPKKIQTVLEWPIPSSTKEVRGFLRLASYYRKFIRGFGGIATPLTRLLTKE-GFHWTSEAESAFTQLKHALTSPHVLRLQDFSQPFVVECDACGVGIGAISSQNDK----PVAFFSEALQGSMLVLPTCEKEMLAIVKAIRKWRPYLLGKPFIVRTDQKSLKFLMEQRITTMAQT*WLPKILGYDYTIQCKKRSENRGADALSRLVXLEFSAI 839 KC F + +V +LGH + G+ D KK + +P+P R F+ +YYR+FI+ F + +TRL K F WT E + AF LK L +P +L+ DFS+ F + DA GA+ +QN PVA+ S A T E+E+ AI AI +RPY+ GK F V+TD + L +L + T ++ Y++T++ K +N ADALSR+ E I Sbjct: 508 KCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLFSMVNPSSKLTRIRLELEEYNFTVEYLKGKDNHVADALSRITIKELKDI 743
BLAST of CK935224 vs. ExPASy Swiss-Prot
Match: POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 5.889e-31 Identity = 83/228 (36.40%), Postives = 117/228 (51.32%), Query Frame = 3 Query: 171 VEYLGHLISLVGVAVDPKKIQTVLEWPIPSSTKEVRGFLRLASYYRKFIRGFGGIATPLTRLLTKEG------------FHWTSEAESAFTQLKHALTSPHV-LRLQDFSQPFVVECDACGVGIGAISSQNDKPVAFFSEALQGSMLVLPTCEKEMLAIVKAIRKWRPYLLGKPFI-VRTDQKSLKFLMEQRITTMAQT*WLPKILGYDYTIQCKKRSENRGADALSR 812 VEYLG ++S G DP+K++ + E+P P +VR FL LASYYR FI+ F IA P+T +L E + +AF +L++ L S V L+ DF +PF + DA GIGA+ SQ +P+ S L+ T E+E+LAIV A+ K + +L G I + TD + L F + R T W I ++ + K EN ADALSR Sbjct: 383 VEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADALSR 610 HSP 2 Score: 32.3426 bits (72), Expect = 5.889e-31 Identity = 11/32 (34.38%), Postives = 24/32 (75.00%), Query Frame = 1 Query: 37 VFFNDILVYSKTWADHIFHLKTVLQILSDNSL 132 V+ +D++++S+ +DH+ H+ TVL+ L D ++ Sbjct: 338 VYVDDVIIFSENESDHVRHIDTVLKCLIDANM 369
BLAST of CK935224 vs. ExPASy Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=4 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 7.137e-29 Identity = 83/233 (35.62%), Postives = 121/233 (51.93%), Query Frame = 3 Query: 168 QVEYLGHLISLVGVAVDPKKIQTVLEWPIPSSTKEVRGFLRLASYYRKFIRGFGGIATPLTRLL------------TKEGFHWTSEAESAFTQLKHALTSPHVLRLQDFSQPFVVECDACGVGIGAISSQN----DKPVAFFSEALQGSMLVLPTCEKEMLAIVKAIRKWRPYLLGKPFI-VRTDQKSLKFLMEQRITTMAQT*WLPKILGYDYTIQCKKRSENRGADALSRL 815 QVE+LG++++ G+ DPKK++ + E P P+S KE++ FL + SYYRKFI+ + +A PLT L +K A +F LK L S +L F++PF + DA IGA+ SQ+ D+P+A+ S +L + T EKEMLAI+ ++ R YL G I V TD + L F + R W +I Y+ + K N ADALSR+ Sbjct: 323 QVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVADALSRI 555
BLAST of CK935224 vs. ExPASy Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3) HSP 1 Score: 115.546 bits (288), Expect = 2.533e-28 Identity = 75/233 (32.19%), Postives = 118/233 (50.64%), Query Frame = 3 Query: 138 KKSKCCFGVLQVEYLGHLISLVGVAVDPKKIQTVLEWPIPSSTKEVRGFLRLASYYRKFIRGFGGIATPLTRLLTKEGFHWTSEAESAFTQLKHALTSPHVLRLQDFSQPFVVECDACGVGIGAISSQNDKP------VAFFSEALQGSMLVLPTCEKEMLAIVKAIRKWRPYLLGKPFIVRTDQKSLKFLMEQRITTMAQT*WLPKILGYDYTIQCKKRSENRGADALSRLV 818 KK KC F + E+LG+ I + +A K + ++P P + K+ + FL + +YYR+FI IA P+ +L + WT + + A +LK AL + VL + + + DA GIGA+ + D V +FS++L+ + P E E+L I+KA+ +R L GK F +RTD SL L + WL + YD+T++ +N ADA+SR V Sbjct: 779 KKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPI-QLFICDKSQWTEKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRAV 1010 HSP 2 Score: 31.5722 bits (70), Expect = 2.533e-28 Identity = 14/37 (37.84%), Postives = 25/37 (67.57%), Query Frame = 1 Query: 37 VFFNDILVYSKTWADHIFHLKTVLQILSDNSLFKKNQ 147 V+ +DIL++S++ +H HL TVL+ L + +L K + Sbjct: 745 VYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKK 781
BLAST of CK935224 vs. ExPASy Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2) HSP 1 Score: 114.775 bits (286), Expect = 4.294e-28 Identity = 74/233 (31.76%), Postives = 118/233 (50.64%), Query Frame = 3 Query: 138 KKSKCCFGVLQVEYLGHLISLVGVAVDPKKIQTVLEWPIPSSTKEVRGFLRLASYYRKFIRGFGGIATPLTRLLTKEGFHWTSEAESAFTQLKHALTSPHVLRLQDFSQPFVVECDACGVGIGAISSQNDKP------VAFFSEALQGSMLVLPTCEKEMLAIVKAIRKWRPYLLGKPFIVRTDQKSLKFLMEQRITTMAQT*WLPKILGYDYTIQCKKRSENRGADALSRLV 818 KK KC F + E+LG+ I + +A K + ++P P + K+ + FL + +YYR+FI IA P+ +L + WT + + A +LK AL + VL + + + DA GIGA+ + D V +FS++L+ + P E E+L I+KA+ +R L GK F +RTD SL L + WL + YD+T++ +N ADA+SR + Sbjct: 805 KKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPI-QLFICDKSQWTEKQDKAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRAI 1036 HSP 2 Score: 31.5722 bits (70), Expect = 4.294e-28 Identity = 14/37 (37.84%), Postives = 25/37 (67.57%), Query Frame = 1 Query: 37 VFFNDILVYSKTWADHIFHLKTVLQILSDNSLFKKNQ 147 V+ +DIL++S++ +H HL TVL+ L + +L K + Sbjct: 771 VYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKK 807 The following BLAST results are available for this feature:
BLAST of CK935224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK935224 ID=CK935224; Name=CK935224; organism=Citrus sinensis; type=EST; length=840bpback to top |