CK935235

Overview
NameCK935235
Unique NameCK935235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935235_ssr203 microsatellite CK935235_ssr203:203..214. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1783 contig Csv1_Contig1783:1..899. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK935235 vs. ExPASy Swiss-Prot
Match: AIR12_ARATH (Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12 PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 9.663e-19
Identity = 59/161 (36.65%), Postives = 86/161 (53.42%), Query Frame = 3 
Query:  195 QAFNNNKVYSTCTDLPVLNSFLHWNYDQSTNTVDLAFRHTTTSSSR-WVAWALNPSGQRMAGSQCLVAFQNSTG-RPVAYTTPIGSGSPTLQPGSLSFQVPNISA-TLEGNQWTIFAXXXXXXXXXXXXXVWQ-EGPMNGDTPGAHAMSGDNARSVGTIDF 665
            Q  N+   + +C DLPVLNS+LH+ Y+ S +++ +AF  T + ++  WVAWA+NP+G +MAGSQ  +A+++  G  PV  T  I S S +L  G L+F   N+ A +L G +  IF              VWQ  G +    PG H    DN  S   + F
Sbjct:   32 QNLNSAGPFDSCEDLPVLNSYLHYTYNSSNSSLSVAFVATPSQANGGWVAWAINPTGTKMAGSQAFLAYRSGGGAAPVVKTYNISSYS-SLVEGKLAFDFWNLRAESLSGGRIAIFTTVKVPAGADSVNQVWQIGGNVTNGRPGVHPFGPDNLGSHRVLSF 191
The following BLAST results are available for this feature:
BLAST of CK935235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AIR12_ARATH9.663e-1936.65Auxin-induced in root cultures protein 12 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004564_B11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIIF_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935235 ID=CK935235; Name=CK935235; organism=Citrus sinensis; type=EST; length=898bp
GGGGAGACTCTTCATTTGGAAACATTTTGCCTTGGGAAAACACTTCCAGT
GCTTTCGGGAACTTGTTTTCATTTCAAGGATTTGATCTGCTTCCTCTAGA
TCAACATGGTGAACAAAGCTATAGCATGTGCTTTGTTCTTTAGTTTCGTT
GCTGCTCTTTTTGCTTCATCATATGCACAACAACTTGCGGACGCCAGGCT
TTCAACAACAACAAAGTATACAGTACATGCACAGATCTTCCCGTGCTGAA
TTCATTTCTCCACTGGAATTATGATCAGTCAACAAACACCGTCGATCTCG
CCTTCCGGCACACGACCACGAGCTCATCCCGATGGGTGGCATGGGCACTG
AACCCATCAGGCCAAAGAATGGCAGGCTCACAGTGTCTTGTGGCCTTTCA
AAACTCAACTGGGCGTCCCGTGGCTTATACTACTCCTATTGGTTCTGGCT
CGCCGACGCTGCAACCGGGTAGTTTGAGCTTCCAAGTGCCAAATATTTCA
GCCACTCTTGAGGGAAATCAATGGACTATTTTTGCAACTTTGCAGCTTAC
TAACAATTTGTTGTCAACTAACCAAGTTTGGCAAGAAGGTCCAATGAACG
GTGATACTCCTGGCGCCCATGCCATGAGCGGTGATAATGCAAGATCAGTT
GGTACCATTGATTTTAGAACCGGACAGACCACAGCAGGTGGTGGAAGCTC
CGACTCCAGGAGAAGGAGGAGGAATACTCATGGAGTACTAAACGCAGTGA
GTTGGGGAGTTCTCATGCCAATGGGAGCCATGATAGCTAGGTACCTTAAG
GTGTTCAAGACTGCAAATCCAGCATGGTTTTATCTCCATGTTGCTTGCCA
AGCTTCTGGCTATATTGTTGGCGTTGCAGGATGGGGAACTGGTATCAN
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