CK935239

Overview
NameCK935239
Unique NameCK935239
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935239_ssr142 microsatellite CK935239_ssr142:142..163. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK935239 vs. ExPASy Swiss-Prot
Match: XCP1_ARATH (Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 3.558e-60
Identity = 113/189 (59.79%), Postives = 139/189 (73.54%), Query Frame = 1
Query:  286 EFSIVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPXXXXXXXXXXXXXXXXXXXXLYKNVEDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVTGNLTALSEQELLSCDTN-NFGCEGGLLFY 849
            +FSIVGY+PE LT+TDKL+ELFESWM +H K+Y+S EEK+HR E+F++NL HID RN E+   +SYWLGLNEF+D++HEEFK +YL   KP                     Y+++ DLP+SVDWRKKGAV  VK+Q  CG CWAFS VAAVEGINQI TGNL++LSEQEL+ CDT  N GC GGL+ Y
Sbjct:   30 DFSIVGYTPEHLTNTDKLLELFESWMSEHSKAYKSVEEKVHRFEVFRENLMHIDQRNNEI---NSYWLGLNEFADLTHEEFKGRYLGLAKPQFSRKRQPSANFR--------YRDITDLPKSVDWRKKGAVAPVKDQGQCGSCWAFSTVAAVEGINQITTGNLSSLSEQELIDCDTTFNSGCNGGLMDY 207          
BLAST of CK935239 vs. ExPASy Swiss-Prot
Match: XCP2_ARATH (Xylem cysteine proteinase 2 OS=Arabidopsis thaliana GN=XCP2 PE=1 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 3.117e-56
Identity = 113/189 (59.79%), Postives = 133/189 (70.37%), Query Frame = 1
Query:  286 EFSIVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPXXXXXXXXXXXXXXXXXXXXLYKNVEDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVTGNLTALSEQELLSCDTN-NFGCEGGLLFY 849
            ++SIVGYSPE+L S DKL+ELFE+W+    K+YE+ EEK  R E+FKDNLKHID  N++     SYWLGLNEF+D+SHEEFK  YL GLK                      Y++VE +P+SVDWRKKGAV  VKNQ  CG CWAFS VAAVEGIN+IVTGNLT LSEQEL+ CDT  N GC GGL+ Y
Sbjct:   30 DYSIVGYSPEDLESHDKLIELFENWISNFEKAYETVEEKFLRFEVFKDNLKHIDETNKK---GKSYWLGLNEFADLSHEEFKKMYL-GLKTDIVRRDEERSYAEFA------YRDVEAVPKSVDWRKKGAVAEVKNQGSCGSCWAFSTVAAVEGINKIVTGNLTTLSEQELIDCDTTYNNGCNGGLMDY 208          
BLAST of CK935239 vs. ExPASy Swiss-Prot
Match: PAPA4_CARPA (Papaya proteinase 4 OS=Carica papaya PE=1 SV=3)

HSP 1 Score: 204.912 bits (520), Expect = 4.658e-52
Identity = 100/184 (54.35%), Postives = 130/184 (70.65%), Query Frame = 1
Query:  286 EFSIVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPXXXXXXXXXXXXXXXXXXXXLYKNVEDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVTGNLTALSEQELLSCDTNNFGCEGG 837
            +FSIVGYS ++LTST++L++LF SWMLKH K+Y++ +EKL+R EIFKDNLK+ID RN+ +   + YWLGLNEFSD+S++EFK KY+  L                      + +++ DLP+SVDWR KGAVT VK+Q  C  CWAFS VA VEGIN+I TGNL  LSEQEL+ CD  ++GC  G
Sbjct:   27 DFSIVGYSQDDLTSTERLIQLFNSWMLKHNKNYKNVDEKLYRFEIFKDNLKYIDERNKMI---NGYWLGLNEFSDLSNDEFKEKYVGSLPEDYTNQPYDEEF---------VNEDIVDLPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDKQSYGCNRG 198          
BLAST of CK935239 vs. ExPASy Swiss-Prot
Match: PAPA2_CARPA (Chymopapain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 1.038e-51
Identity = 100/191 (52.36%), Postives = 132/191 (69.11%), Query Frame = 1
Query:  286 EFSIVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYL-------TGLKPXXXXXXXXXXXXXXXXXXXXLYKNVEDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVTGNLTALSEQELLSCDTNNFGCEGG 837
            +F  VGYS ++LTS ++L++LF+SWMLKH K YES +EK++R EIF+DNL +ID  N++    +SYWLGLN F+D+S++EFK KY+       TGL+                      YK+V + PQS+DWR KGAVT VKNQ  CG CWAFS +A VEGIN+IVTGNL  LSEQEL+ CD +++GC+GG
Sbjct:   27 DFYTVGYSQDDLTSIERLIQLFDSWMLKHNKIYESIDEKIYRFEIFRDNLMYIDETNKK---NNSYWLGLNGFADLSNDEFKKKYVGFVAEDFTGLE--------------HFDNEDFTYKHVTNYPQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSYGCKGG 200          
BLAST of CK935239 vs. ExPASy Swiss-Prot
Match: PAPA3_CARPA (Caricain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 8.785e-51
Identity = 97/185 (52.43%), Postives = 129/185 (69.73%), Query Frame = 1
Query:  283 GEFSIVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPXXXXXXXXXXXXXXXXXXXXLYKNVEDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVTGNLTALSEQELLSCDTNNFGCEGG 837
            G+FSIVGYS ++LTST++L++LF SWML H K YE+ +EKL+R EIFKDNL +ID  N++    +SYWLGLNEF+D+S++EF  KY+  L                      + ++  +LP++VDWRKKGAVT V++Q  CG CWAFSAVA VEGIN+I TG L  LSEQEL+ C+  + GC+GG
Sbjct:   26 GDFSIVGYSQDDLTSTERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKK---NNSYWLGLNEFADLSNDEFNEKYVGSL---------IDATIEQSYDEEFINEDTVNLPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGG 198          
BLAST of CK935239 vs. ExPASy Swiss-Prot
Match: PAPA1_CARPA (Papain OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.338e-50
Identity = 98/185 (52.97%), Postives = 125/185 (67.57%), Query Frame = 1
Query:  283 GEFSIVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPXXXXXXXXXXXXXXXXXXXXLYKNVEDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVTGNLTALSEQELLSCDTNNFGCEGG 837
            G+FSIVGYS  +LTST++L++LFESWMLKH K Y++ +EK++R EIFKDNLK+ID  N++    +SYWLGLN F+DMS++EFK KY   +                      L     ++P+ VDWR+KGAVT VKNQ  CG CWAFSAV  +EGI +I TGNL   SEQELL CD  ++GC GG
Sbjct:   26 GDFSIVGYSQNDLTSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKK---NNSYWLGLNVFADMSNDEFKEKYTGSIA--------GNYTTTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRSYGCNGG 199          
BLAST of CK935239 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.900e-37
Identity = 87/197 (44.16%), Postives = 119/197 (60.41%), Query Frame = 1
Query:  286 EFSIVGYSPEELTSTD------KLVELFESWMLKHGK--SYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPXXXXXXXXXXXXXXXXXXXXLYKNVEDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVTGNLTALSEQELLSCDTN-NFGCEGGLLFY 849
            + SI+ Y  +   ST       +++ ++E+W++KHGK  S  S  EK  R EIFKDNL+ +D  N +     SY LGL  F+D++++E+++KYL G K                          ++LP+S+DWRKKGAV  VK+Q  CG CWAFS + AVEGINQIVTG+L  LSEQEL+ CDT+ N GC GGL+ Y
Sbjct:   23 DMSIISYDEKHGVSTTGGRSEAEVMSIYEAWLVKHGKAQSQNSLVEKDRRFEIFKDNLRFVDEHNEK---NLSYRLGLTRFADLTNDEYRSKYL-GAKMEKKGERRTSLRYEARVG--------DELPESIDWRKKGAVAEVKDQGGCGSCWAFSTIGAVEGINQIVTGDLITLSEQELVDCDTSYNEGCNGGLMDY 207          
BLAST of CK935239 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 7.220e-37
Identity = 86/190 (45.26%), Postives = 115/190 (60.53%), Query Frame = 1
Query:  286 EFSIVGYSPEELTSTDKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQI-TSSYWLGLNEFSDMSHEEFKNKYLTGLKPXXXXXXXXXXXXXXXXXXXXLYKNVEDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVTGNLTALSEQELLSCDTN-NFGCEGGLLFY 849
            + SIV Y      S ++   L+  W  +HGKSY +  E+  R   F+DNL++ID  N        S+ LGLN F+D+++EE+++ YL GL+                     L  + E LP+SVDWR KGAV  +K+Q  CG CWAFSA+AAVEGINQIVTG+L +LSEQEL+ CDT+ N GC GGL+ Y
Sbjct:   22 DMSIVSYGER---SEEEARRLYAEWKAEHGKSYNAVGEEERRYAAFRDNLRYIDEHNAAADAGVHSFRLGLNRFADLTNEEYRDTYL-GLR--------NKPRRERKVSDRYLAADNEALPESVDWRTKGAVAEIKDQGGCGSCWAFSAIAAVEGINQIVTGDLISLSEQELVDCDTSYNEGCNGGLMDY 199          
BLAST of CK935239 vs. ExPASy Swiss-Prot
Match: BROM1_ANACO (Fruit bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.758e-34
Identity = 72/169 (42.60%), Postives = 104/169 (61.54%), Query Frame = 1
Query:  331 DKLVELFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPXXXXXXXXXXXXXXXXXXXXLYKNVEDLPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVTGNLTALSEQELLSCDTNNFGCEGG 837
            D +++ FE WM ++G+ Y+  +EK+ R +IFK+N+KHI+  N   +  +SY LG+N+F+DM+  EF  +Y     P                       N+  +PQS+DWR  GAV  VKNQNPCG CW+F+A+A VEGI +I TG L +LSEQE+L C   ++GC+GG
Sbjct:   31 DPMMKRFEEWMAEYGRVYKDDDEKMRRFQIFKNNVKHIETFNSRNE--NSYTLGINQFTDMTKSEFVAQYTGVSLPLNIEREPVVSFDDV---------NISAVPQSIDWRDYGAVNEVKNQNPCGSCWSFAAIATVEGIYKIKTGYLVSLSEQEVLDCAV-SYGCKGG 187          
BLAST of CK935239 vs. ExPASy Swiss-Prot
Match: CPR3_ARATH (Probable cysteine proteinase At4g11310 OS=Arabidopsis thaliana GN=At4g11310 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.274e-33
Identity = 82/168 (48.81%), Postives = 100/168 (59.52%), Query Frame = 1
Query:  346 LFESWMLKHGKSYESTEEKLHRLEIFKDNLKHIDARNRELQITSSYWLGLNEFSDMSHEEFKNKYLTGLKPXXXXXXXXXXXXXXXXXXXXLYKNVED--LPQSVDWRKKGAVTHVKNQNPCGGCWAFSAVAAVEGINQIVTGNLTALSEQELLSCDTNNFGCEGGLL 843
            +FESWM+KHGK Y S  EK  RL IF+DNL+ I+ RN E     SY LGL  F+D+S  E+K +   G  P                     YK   D  LP+SVDWR +GAVT VK+Q  C  CWAFS V AVEG+N+IVTG L  LSEQ+L++C+  N GC GG L
Sbjct:   48 IFESWMVKHGKVYGSVAEKERRLTIFEDNLRFINNRNAE---NLSYRLGLTGFADLSLHEYK-EVCHGADPRPPRNHVFMTSSDR-------YKTSADDVLPKSVDWRNEGAVTEVKDQGHCRSCWAFSTVGAVEGLNKIVTGELVTLSEQDLINCNKENNGCGGGKL 204          
The following BLAST results are available for this feature:
BLAST of CK935239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
XCP1_ARATH3.558e-6059.79Xylem cysteine proteinase 1 OS=Arabidopsis thalian... [more]
XCP2_ARATH3.117e-5659.79Xylem cysteine proteinase 2 OS=Arabidopsis thalian... [more]
PAPA4_CARPA4.658e-5254.35Papaya proteinase 4 OS=Carica papaya PE=1 SV=3[more]
PAPA2_CARPA1.038e-5152.36Chymopapain OS=Carica papaya PE=1 SV=2[more]
PAPA3_CARPA8.785e-5152.43Caricain OS=Carica papaya PE=1 SV=2[more]
PAPA1_CARPA3.338e-5052.97Papain OS=Carica papaya PE=1 SV=1[more]
RD21A_ARATH1.900e-3744.16Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
ORYA_ORYSJ7.220e-3745.26Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
BROM1_ANACO9.758e-3442.60Fruit bromelain OS=Ananas comosus PE=1 SV=1[more]
CPR3_ARATH1.274e-3348.81Probable cysteine proteinase At4g11310 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004564_C03 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIIF_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935239 ID=CK935239; Name=CK935239; organism=Citrus sinensis; type=EST; length=850bp
GGGGAGGGAAAGAGTAATAATAAATACTAGAGGCAAGCAGCAGGAAGTTC
CGGCATATCATCACCTACTTTTATATTTTACGTATATAAATAACCCGATC
ATCAAGCGCGCATAGGTAAATTAACTTGAAGATCAAGGGGGGAGAGAGAG
AGAGAGAGAGAGATGAAAATGTTATCTTCCAATTGTAAGTTGTTGCTTCG
TCTTTCTTTGTGCGTGTCTCTCTTGATGATCATATGCATACGCTGCTCTA
GCAGTAGAACTCTTCGAGGTCATGAATATGATGGTGAGTTCTCCATTGTG
GGATATTCACCGGAGGAGTTGACATCCACGGACAAGCTGGTTGAGCTATT
CGAGTCATGGATGTTGAAACATGGGAAATCGTATGAAAGCACGGAAGAGA
AGTTGCATAGATTGGAGATATTCAAAGACAACTTGAAGCACATTGATGCG
AGGAACAGAGAGCTGCAAATTACTAGTAGCTATTGGCTTGGTCTGAATGA
GTTTTCAGATATGAGCCACGAAGAGTTCAAGAACAAGTACTTAACAGGAC
TCAAACCCGATGATGATGAGTTCCGCAGAAGGAGTCACCGCGACTCTAGT
AGCAGTAGTGATCATTTTTTGTATAAAAATGTAGAGGATTTGCCTCAATC
CGTTGACTGGAGGAAGAAAGGAGCTGTTACTCATGTGAAGAACCAAAATC
CTTGTGGTGGATGTTGGGCATTTTCAGCAGTAGCAGCAGTGGAGGGGATA
AATCAGATAGTGACGGGAAATCTAACGGCGTTGTCGGAGCAAGAGTTGCT
TAGCTGCGACACAAATAACTTTGGGTGTGAAGGAGGTCTTTTGTTTTATG
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