CK935244

Overview
NameCK935244
Unique NameCK935244
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1784 contig Csv1_Contig1784:1..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935244 vs. ExPASy Swiss-Prot
Match: DHBB_BACSU (Isochorismatase OS=Bacillus subtilis GN=dhbB PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.052e-14
Identity = 57/175 (32.57%), Postives = 87/175 (49.71%), Query Frame = 1
Query:  118 PNPKSSVLLVIDMQNYF----SSIAKPILD---NTLATVQLCRRASIPVFFTRHC-HKSPADYGMLGEWWNGDL---VYDGTADAELLPEIRGLVAAADVVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLA 609
            P+P  +VLL+ DMQNYF    ++ A P+ +   N       C +  IPV +T     ++P D  +L ++W   L    Y+     EL PE        D+V+ K  YSAF  T L E +   G +++I+ G+  ++ C  TA +AF+   + FF  DA A   LE H+  L+  A
Sbjct:   26 PDPNRAVLLIHDMQNYFVDAFTAGASPVTELSANIRKLKNQCVQLGIPVVYTAQPGSQNPDDRALLTDFWGPGLNSGPYEEKIITELAPE------DDDLVLTKWRYSAFKRTNLLEMMRKEGRDQLIITGIYAHIGCLVTACEAFMEDIKAFFVGDAVADFSLEKHQMALEYAA 194          
BLAST of CK935244 vs. ExPASy Swiss-Prot
Match: ENTB_SHIFL (Isochorismatase OS=Shigella flexneri GN=entB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.269e-13
Identity = 60/198 (30.30%), Postives = 96/198 (48.48%), Query Frame = 1
Query:   64 MATSKCSSY---EKYEIRKRNPN----PKSSVLLVIDMQNYFSS-------IAKPILDNTLATVQLCRRASIPVFFTRHC-HKSPADYGMLGEWWNGDLVYDGTADAELLPEIRGLVAAAD-VVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLA 609
            MA  K  +Y   E ++I +   +    P+ + LL+ DMQ+YF S       + + ++ N  A    C++ +IPV++T     +S  D  +L + W   L    T   E    +  L   AD  V+ K  YSAF  + L++ L   G  ++I+ GV  ++ C TTA DAF+R  + F   DA A    + H  +LK +A
Sbjct:    1 MAIPKLQAYALPESHDIPQNKVDWAFEPQRAALLIHDMQDYFVSFWGENCPMMEQVIANIAALRDYCKQHNIPVYYTAQPKEQSDEDRALLNDMWGPGL----TRSPEQQKVVDRLTPDADDTVLVKWRYSAFHRSPLEQMLKESGRNQLIITGVYAHIGCMTTATDAFMRDIKPFMVADALADFSRDEHLMSLKYVA 194          
BLAST of CK935244 vs. ExPASy Swiss-Prot
Match: ENTB_ECOLI (Isochorismatase OS=Escherichia coli (strain K12) GN=entB PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.269e-13
Identity = 60/198 (30.30%), Postives = 96/198 (48.48%), Query Frame = 1
Query:   64 MATSKCSSY---EKYEIRKRNPN----PKSSVLLVIDMQNYFSS-------IAKPILDNTLATVQLCRRASIPVFFTRHC-HKSPADYGMLGEWWNGDLVYDGTADAELLPEIRGLVAAAD-VVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLA 609
            MA  K  +Y   E ++I +   +    P+ + LL+ DMQ+YF S       + + ++ N  A    C++ +IPV++T     +S  D  +L + W   L    T   E    +  L   AD  V+ K  YSAF  + L++ L   G  ++I+ GV  ++ C TTA DAF+R  + F   DA A    + H  +LK +A
Sbjct:    1 MAIPKLQAYALPESHDIPQNKVDWAFEPQRAALLIHDMQDYFVSFWGENCPMMEQVIANIAALRDYCKQHNIPVYYTAQPKEQSDEDRALLNDMWGPGL----TRSPEQQKVVDRLTPDADDTVLVKWRYSAFHRSPLEQMLKESGRNQLIITGVYAHIGCMTTATDAFMRDIKPFMVADALADFSRDEHLMSLKYVA 194          
BLAST of CK935244 vs. ExPASy Swiss-Prot
Match: ENTB_ECO57 (Isochorismatase OS=Escherichia coli O157:H7 GN=entB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.269e-13
Identity = 60/198 (30.30%), Postives = 96/198 (48.48%), Query Frame = 1
Query:   64 MATSKCSSY---EKYEIRKRNPN----PKSSVLLVIDMQNYFSS-------IAKPILDNTLATVQLCRRASIPVFFTRHC-HKSPADYGMLGEWWNGDLVYDGTADAELLPEIRGLVAAAD-VVIEKNTYSAFGNTRLQERLVGMGVEEVIVCGVMTNLCCETTARDAFVRGFRVFFSTDATATSDLELHEATLKNLA 609
            MA  K  +Y   E ++I +   +    P+ + LL+ DMQ+YF S       + + ++ N  A    C++ +IPV++T     +S  D  +L + W   L    T   E    +  L   AD  V+ K  YSAF  + L++ L   G  ++I+ GV  ++ C TTA DAF+R  + F   DA A    + H  +LK +A
Sbjct:    1 MAIPKLQAYALPESHDIPQNKVDWAFEPQRAALLIHDMQDYFVSFWGENCPMMEQVIANIAALRDYCKQHNIPVYYTAQPKEQSDEDRALLNDMWGPGL----TRSPEQQKVVDRLTPDADDTVLVKWRYSAFHRSPLEQMLKESGRNQLIITGVYAHIGCMTTATDAFMRDIKPFMVADALADFSRDEHLMSLKYVA 194          
The following BLAST results are available for this feature:
BLAST of CK935244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DHBB_BACSU2.052e-1432.57Isochorismatase OS=Bacillus subtilis GN=dhbB PE=1 ... [more]
ENTB_SHIFL2.269e-1330.30Isochorismatase OS=Shigella flexneri GN=entB PE=3 ... [more]
ENTB_ECOLI2.269e-1330.30Isochorismatase OS=Escherichia coli (strain K12) G... [more]
ENTB_ECO572.269e-1330.30Isochorismatase OS=Escherichia coli O157:H7 GN=ent... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004564_B03 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIIF_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935244 ID=CK935244; Name=CK935244; organism=Citrus sinensis; type=EST; length=799bp
GGGGATTTAAGATCCCATACACCAGCAGAAATAATGTCTCTGAGAAGTCA
AATCCAACAAGAAATGGCGACATCAAAGTGTTCATCGTACGAGAAATACG
AGATCAGAAAGAGAAATCCAAATCCCAAATCCTCTGTTTTATTAGTCATT
GACATGCAAAACTACTTTTCCTCCATAGCCAAACCCATACTCGACAACAC
TCTCGCCACCGTCCAGCTCTGCCGACGGGCCTCCATCCCCGTTTTCTTCA
CGCGCCACTGCCACAAGTCCCCCGCCGACTACGGCATGCTCGGCGAGTGG
TGGAACGGCGATCTGGTCTACGACGGCACCGCCGACGCCGAGCTCTTGCC
CGAGATCAGAGGGCTGGTGGCGGCTGCCGACGTGGTCATAGAGAAGAATA
CTTACAGCGCGTTTGGTAACACGCGGCTGCAGGAGCGGTTGGTGGGGATG
GGGGTGGAGGAAGTGATCGTGTGTGGTGTTATGACGAACTTGTGCTGCGA
AACGACGGCGCGGGACGCGTTTGTGAGAGGGTTTAGGGTGTTCTTCTCGA
CGGATGCGACTGCCACGTCGGATTTGGAGCTGCACGAGGCGACGTTGAAG
AATTTGGCTTATGGCTTTGCTTACTTGTTTGATTGCAAGAGGCTCGAAGC
TGGGCTTTTTGGGGCTTAAAAGGAAAAACAAAAAAACTGTGAGAAGGAGT
CTCCCATTATAAGTTGCTTGGAGACTCTGTAAGTTCTCATTCCAAAATTA
GGTTGTGTGTTTTTGCAAAAACTATGTTTTCCTTTTTCTTTTTCCTTTT
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