CK935258

Overview
NameCK935258
Unique NameCK935258
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935258 vs. ExPASy Swiss-Prot
Match: SF3BB_ARATH (Uncharacterized protein At4g14342 OS=Arabidopsis thaliana GN=At4g14342 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.066e-42
Identity = 79/87 (90.80%), Postives = 86/87 (98.85%), Query Frame = 3
Query:  102 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKMLLPCGLPPEREDD 362
            MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YF+IAENESIGRE YNFMQKMLLPCGLPPERE++
Sbjct:    1 MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREEE 87          
BLAST of CK935258 vs. ExPASy Swiss-Prot
Match: SF3BA_ARATH (Uncharacterized protein At3g23325 OS=Arabidopsis thaliana GN=At3g23325 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.066e-42
Identity = 79/87 (90.80%), Postives = 85/87 (97.70%), Query Frame = 3
Query:  102 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKMLLPCGLPPEREDD 362
            MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YF+IAENESIGRE YNFMQKMLLPCGLPPERED+
Sbjct:    1 MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE 87          
BLAST of CK935258 vs. ExPASy Swiss-Prot
Match: SF3B5_DROME (Probable splicing factor 3B subunit 5 OS=Drosophila melanogaster GN=CG11985 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.071e-26
Identity = 53/83 (63.86%), Postives = 66/83 (79.52%), Query Frame = 3
Query:  114 DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKMLLPCGLPPEREDD 362
            +R+NI+SQLEHLQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY IL YF+IAENES  R  +N M++ML PCG PPE+ +D
Sbjct:    3 ERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKARVRFNLMERMLQPCGPPPEKLED 85          
BLAST of CK935258 vs. ExPASy Swiss-Prot
Match: SF3B5_HUMAN (Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF3B5 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.498e-25
Identity = 49/84 (58.33%), Postives = 66/84 (78.57%), Query Frame = 3
Query:  111 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKMLLPCGLPPEREDD 362
            +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YF+IAENES  R  +N M+KML PCG P ++ ++
Sbjct:    2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85          
BLAST of CK935258 vs. ExPASy Swiss-Prot
Match: SF3B5_BOVIN (Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B5 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.498e-25
Identity = 49/84 (58.33%), Postives = 66/84 (78.57%), Query Frame = 3
Query:  111 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKMLLPCGLPPEREDD 362
            +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YF+IAENES  R  +N M+KML PCG P ++ ++
Sbjct:    2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85          
BLAST of CK935258 vs. ExPASy Swiss-Prot
Match: SF3B5_MOUSE (Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf3b5 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.495e-24
Identity = 48/84 (57.14%), Postives = 65/84 (77.38%), Query Frame = 3
Query:  111 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKMLLPCGLPPEREDD 362
            +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YF+IAENES  R  +N M+KML P G P ++ ++
Sbjct:    2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPSGPPADKPEE 85          
BLAST of CK935258 vs. ExPASy Swiss-Prot
Match: SF3B5_DICDI (Splicing factor 3B subunit 5 OS=Dictyostelium discoideum GN=sf3b5 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.600e-22
Identity = 47/84 (55.95%), Postives = 64/84 (76.19%), Query Frame = 3
Query:  111 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKMLLPCGLPPEREDD 362
            S+R ++NSQLEHLQ +YVGTGHAD+++ EW  N  RDS +S++GH   L+ FSIAENES+GR  YN + KM+ PCG  P+ +D+
Sbjct:    2 SERESLNSQLEHLQMRYVGTGHADISKHEWLTNQHRDSLSSFIGHSSFLSLFSIAENESVGRVRYNTLTKMISPCGPAPKIKDN 85          
BLAST of CK935258 vs. ExPASy Swiss-Prot
Match: YHV5_SCHPO (Uncharacterized protein C211.05 OS=Schizosaccharomyces pombe GN=SPBC211.05 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 3
Query:  111 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAENESIGREHYNFMQKMLLPCGLPP 347
            +DR    ++LE LQA+YVG G+A   ++EW VN  RD+ +S VGH P+LAY + A  E   +   N ++KM++PCG PP
Sbjct:    2 ADRLRSQAKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEPRVQVRKNLLEKMIMPCGPPP 80          
The following BLAST results are available for this feature:
BLAST of CK935258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SF3BB_ARATH1.066e-4290.80Uncharacterized protein At4g14342 OS=Arabidopsis t... [more]
SF3BA_ARATH1.066e-4290.80Uncharacterized protein At3g23325 OS=Arabidopsis t... [more]
SF3B5_DROME1.071e-2663.86Probable splicing factor 3B subunit 5 OS=Drosophil... [more]
SF3B5_HUMAN4.498e-2558.33Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF... [more]
SF3B5_BOVIN4.498e-2558.33Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B... [more]
SF3B5_MOUSE6.495e-2457.14Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf... [more]
SF3B5_DICDI1.600e-2255.95Splicing factor 3B subunit 5 OS=Dictyostelium disc... [more]
YHV5_SCHPO2.094e-1445.57Uncharacterized protein C211.05 OS=Schizosaccharom... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004564_B02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIIF_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935258 ID=CK935258; Name=CK935258; organism=Citrus sinensis; type=EST; length=694bp
GGGGACTAGTATTTCTTTTTCGCTCTTCAGCTTCAAAACCCTGCCATCGC
ATTCGCTCTTGCAGCCTTTTTTGTTTTCATTCTCAAAAAAGCACATTAAG
AATGCAGGCAAGTGATAGGTTTAATATAAACTCCCAGCTAGAGCATCTGC
AAGCCAAATACGTTGGTACTGGTCATGCTGATTTGAACAGATTTGAGTGG
GCTGTGAACATTCAGCGTGATAGCTATGCGTCTTATGTTGGACATTATCC
TATTTTGGCCTACTTTTCTATTGCCGAGAATGAATCTATTGGAAGGGAAC
ACTATAACTTTATGCAGAAAATGCTTTTGCCTTGTGGTCTGCCCCCTGAA
AGAGAAGATGATTGAGAGTTTAAGATGCTCTTTCTGAGAACGGAACATTT
TGGGCTCCAGCTTTCTCCAGGCTTGAGGAGCATTTGTGTTATTGCTAGGT
GTTCGCTTTCAAGTAACAATGTTCATGTGAGACTGACAAAAACTGTGTAG
TTTTGTCTACTGGGTTGAATGCTCTAGTGTTATTGTGATCCTTGGATTTA
TATAAATTTTTATGTAGTTTATCAGTGTGCTCGTAAATTGTTTAAATTAA
AGTCTGAAGGCTATGGATCTGAACTATTGTGCCCACTGCCCTGCTTGATA
AATGTTTATTTCTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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