CK935259

Overview
NameCK935259
Unique NameCK935259
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935259_ssr28 microsatellite CK935259_ssr28:28..45. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12009 contig Csv1_Contig12009:60..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_DESDG (5'-nucleotidase surE OS=Desulfovibrio desulfuricans (strain G20) GN=surE PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.701e-30
Identity = 81/196 (41.33%), Postives = 115/196 (58.67%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQGTSIFK 708
            I +TNDDGI APGLR++ + L     +TVQV AP +E+SAV H++T   P+  +    +G     V GTP DC  LG++ AL    PD+V+SGIN G+N G  ++YSGTV+ A EA   G PS+++SYD      N     +AA A   +   I+  +  Q+ P RC LN++LP D+P    KG  L  Q  +++K
Sbjct:    3 IALTNDDGIQAPGLRAMYKALKEAG-HTVQVVAPVTEQSAVGHAVTIALPLRVKIFAENGFQGMGVYGTPTDCVKLGLN-ALLDKKPDIVVSGINAGANVGPDILYSGTVSAATEAAHMGYPSLAVSYD------NFKPDDIAAHARFAV--EIMESMPWQSLPPRCVLNLNLP-DVPMQQCKGLTLCPQTRAVWK 187          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_CARHZ (5'-nucleotidase surE OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=surE PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.333e-29
Identity = 80/192 (41.67%), Postives = 108/192 (56.25%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDG--VTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP-TDIPNNKGYKLTKQG 693
            I++TNDDGI APG+++L +VL    +Y + V APD EKSA  H IT   P+ A    F    V   +V GTPADC  L V +AL    PDLV+SGIN G N G  V+YSGTV+ A EA  +G+P+++IS      +    +Y  AAE    I   +L  I    +P    LNI++P   +   KG  +T+ G
Sbjct:    3 ILLTNDDGIYAPGIKALRQVLEKEGKYELTVVAPDREKSATGHGITVHRPLRAFDITFKNSKVRGVSVDGTPADCVKLAV-EALLDKPPDLVLSGINSGPNLGTDVLYSGTVSAAIEAMINGIPAIAISMGSFAFED--EEYLRAAE----IFARLLPRILEHPWPRDTILNINIPNVPLEEIKGIAITRLG 187          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_AQUAE (5'-nucleotidase surE OS=Aquifex aeolicus GN=surE PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.047e-29
Identity = 78/197 (39.59%), Postives = 108/197 (54.82%), Query Frame = 1
Query:  121 PTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPT-DIPNNKGYKLTKQGTSIFK 708
            PT ++ NDDG  +PG+ +L   L S  R  V V APD   S V HS+T+  P+  R  D D  T   + GTPADC  LG    L    PDLV+SGIN G N G  + YSGTV+GA E    G+PS++ S     G+ N+  +   A+ C+ I+  +L    N+  PE  +LN+++P       KG K+T+QG   +K
Sbjct:    2 PTFLLVNDDGYFSPGINALREALKSLGR--VVVVAPDRNLSGVGHSLTFTEPLKMRKIDTDFYTV--IDGTPADCVHLGYRVILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFS---AFGRENIM-FEEIAKVCVDIVKKVL----NEGIPEDTYLNVNIPNLRYEEIKGIKVTRQGKRAYK 186          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_DESAA (5'-nucleotidase surE OS=Desulfatibacillum alkenivorans (strain AK-01) GN=surE PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.980e-29
Identity = 78/192 (40.62%), Postives = 116/192 (60.42%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISA-RPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNK--GYKLTKQG 693
            I+VTNDDGI  PGL +L   L   +R  VQV APD E+SA++H+IT   P+ A    + +G+ ++AV+GTPADC  LGV + L    PDLV+SGIN G N G ++ YSGTV+ AREA   G+P++++S          N Y          +  ++A++  +  P+  FLN++LP D+P  +  G ++ +QG
Sbjct:    3 ILVTNDDGIHHPGLAALRDGLARDHR--VQVVAPDRERSAIAHAITLLTPLRAFSQTNGNGIPSWAVNGTPADCVKLGVLE-LLGEKPDLVVSGINPGPNVGVNLNYSGTVSAAREAALLGIPAIAVSVS--------NPYGTHFSDAARFMQDLVADVAERGLPKGVFLNVNLP-DVPMEEIAGVRICRQG 182          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_THEAB (5'-nucleotidase surE OS=Thermosipho africanus (strain TCF52B) GN=surE PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.788e-29
Identity = 84/197 (42.64%), Postives = 117/197 (59.39%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF-DGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSI-SYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQGTSIF 705
            I+VTNDDG+ A G+  L R L  + +Y V V AP++E+SAV H+IT R P+  R  D  +    Y+VSGTPADC  +G+   L    PDL+ISGIN G+N G  VVYSGTV+GA E    GVPS+++ SY +         Y  AA+  L      L E   ++ P    LNI++P+ +P +  KG+KLT+Q   ++
Sbjct:    3 ILVTNDDGVTADGILCLARTL--SKKYKVTVVAPETEQSAVGHAITLRLPLWLRKLDINENFEIYSVSGTPADCVKMGIDVVLGEK-PDLLISGINRGNNLGTDVVYSGTVSGALEGAIAGVPSIAVSSYSFENPM-----YETAAKFILD----FLEEFDVRSIPRFTALNINVPS-VPYDQIKGWKLTRQSKRMY 186          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_SYNFM (5'-nucleotidase surE OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=surE PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.788e-29
Identity = 71/192 (36.98%), Postives = 118/192 (61.46%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDG-VTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQG 693
            I++TNDDG+ A G+ +L   L+    + V V AP++E+SAV H+ITW  P+  +P   +G    +A++GTPADC  + V++ + P  PD+V+SG+NMG+N G +V+YSGTV+ A EA   G+PS+++S D         D++   E     +  +L  +  +  P    LN+++P ++P +  +G K+T+QG
Sbjct:    3 ILLTNDDGVYAKGIETLYLALIE--EHDVTVVAPETEQSAVGHAITWLDPLRVKPVHRNGHFFGHALTGTPADCVKIAVAELMSPP-PDMVVSGVNMGANVGVNVIYSGTVSAATEAAVMGIPSMAVSID----SFQPTDFSAVTE----FVPRLLRIVAKEGLPPGVCLNVNVP-NLPADRIRGVKVTRQG 182          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_THEM4 (5'-nucleotidase surE OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=surE PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.866e-29
Identity = 82/197 (41.62%), Postives = 114/197 (57.87%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF-DGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQGTSIFK 708
            I+VTNDDG+ A G+  L R L  + ++ V V AP++E+SAV H+IT R P+  R  D  +    YAVSGTPADC  +G+   L    PDL+ISGIN G+N G  VVYSGTV+GA E    GVPS++I        S+ +      E     I   L E   ++ P    LNI++P+ +P    KG+KLT+Q   +++
Sbjct:    3 ILVTNDDGVTADGILCLARYL--SKKHEVTVVAPETEQSAVGHAITLRFPLWLRKIDINEEFEIYAVSGTPADCVKMGIDVVL-KEKPDLLISGINRGNNLGTDVVYSGTVSGALEGAIAGVPSIAI--------SSFSFENPLYETAAKFILEFLEEFDVKSIPRFTALNINVPS-VPYGELKGWKLTRQSKRMYE 187          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_SULDN (5'-nucleotidase surE OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=surE PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.158e-28
Identity = 77/179 (43.02%), Postives = 104/179 (58.10%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTY--PERCFLNIDLPTDI 657
            I+VTNDDG +A GLR+LV+ L       V V AP SEKSA  HS+T   P+  R    D        GTP+DC  L +S     S PDL+ISGIN GSN G  + YSGT AGA E   H VPS++IS   +       D+TLA +    +I  ++ +I+N ++  P+R FLN+++P D+
Sbjct:    5 ILVTNDDGYEAKGLRALVKALKELEDVEVMVVAPASEKSACGHSLTLVRPL--RFVGVDDNFFKLDDGTPSDCVYLALSTIYVDSKPDLLISGINRGSNMGEDITYSGTAAGAMEGVLHDVPSIAIS-QVMDFSDPQGDFTLAQK----VIKELVIKIKNGSFPLPQREFLNVNIPPDL 176          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_MOOTA (5'-nucleotidase surE OS=Moorella thermoacetica (strain ATCC 39073) GN=surE PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.158e-28
Identity = 79/192 (41.15%), Postives = 111/192 (57.81%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVT--AYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQG 693
            I+VTNDDGI+APG+++L R L    R  V V AP+ E+SA+ H IT   P+ A    ++G    A AV+GTPADC  L +  AL    P LV+SGINMG+N G  V+YSGTV+GA E   +G PS+++S    GG     D++ AA+    +   I+     +  P    LN+++P   P   KG  +T+ G
Sbjct:    3 ILVTNDDGINAPGIKALSRSLARVGR--VAVVAPEKERSAIGHGITMHKPLRATEVTWEGPVEMALAVNGTPADCVKLALD-ALLDEEPSLVVSGINMGANLGTDVLYSGTVSGALEGCINGRPSLAVSLAGEGGV----DFSFAADFTSRLAGVII----KRGLPAGTLLNLNIPCLPPGEIKGLAITRLG 183          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_FLAPJ (5'-nucleotidase surE OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=surE PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.512e-28
Identity = 78/203 (38.42%), Postives = 111/203 (54.68%), Query Frame = 1
Query:  118 KPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARP--ADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS---YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQGTSIFK 708
            KP I+VTNDDGI APG+RSL+ V+      TV V APDS +SA+ H+IT    +      A+   VT Y+ SGTP DC  L V++ L    PDL +SG+N GSN   +V+YSGT++ A EA   G+P++  S   YDW              E   P I  I  E+  +  P+   LN++ P     + KG K+ +Q  ++++
Sbjct:    3 KPLILVTNDDGISAPGIRSLIAVMQEIG--TVVVVAPDSPQSAMGHAITINSTLHLNKISAENAAVTEYSCSGTPVDCVKLAVNEIL-KQKPDLCVSGVNHGSNSSINVIYSGTMSAAVEAGIEGIPAIGFSLLDYDW----------NADFETFKPYIKKIALEVLQKGLPDSVVLNVNFPKRKEEDLKGIKICRQAKAMWE 192          
The following BLAST results are available for this feature:
BLAST of CK935259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SURE_DESDG4.701e-3041.335'-nucleotidase surE OS=Desulfovibrio desulfurican... [more]
SURE_CARHZ2.333e-2941.675'-nucleotidase surE OS=Carboxydothermus hydrogeno... [more]
SURE_AQUAE3.047e-2939.595'-nucleotidase surE OS=Aquifex aeolicus GN=surE P... [more]
SURE_DESAA3.980e-2940.635'-nucleotidase surE OS=Desulfatibacillum alkenivo... [more]
SURE_THEAB6.788e-2942.645'-nucleotidase surE OS=Thermosipho africanus (str... [more]
SURE_SYNFM6.788e-2936.985'-nucleotidase surE OS=Syntrophobacter fumaroxida... [more]
SURE_THEM48.866e-2941.625'-nucleotidase surE OS=Thermosipho melanesiensis ... [more]
SURE_SULDN1.158e-2843.025'-nucleotidase surE OS=Sulfurimonas denitrificans... [more]
SURE_MOOTA1.158e-2841.155'-nucleotidase surE OS=Moorella thermoacetica (st... [more]
SURE_FLAPJ1.512e-2838.425'-nucleotidase surE OS=Flavobacterium psychrophil... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004563_H04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935259 ID=CK935259; Name=CK935259; organism=Citrus sinensis; type=EST; length=815bp
GGGAAACGCACGACTAAGGACTAACAATTCTTCTTCTTCTTCTTCTTGGA
CCGAACAATCCTGTAGCCGGAGGAAGAAATGGAGCGTCGTGGAATCGCTA
TTGTTAACTCCGATCACAAGCCAACGATTATGGTCACCAACGACGACGGG
ATCGACGCGCCTGGTTTGCGTTCCCTCGTCCGCGTTCTCGTCTCCACCAA
TCGCTACACCGTCCAAGTCTGCGCCCCCGATTCAGAAAAATCGGCTGTTA
GTCATAGTATTACTTGGCGTCACCCAATTTCGGCCAGACCAGCAGATTTT
GATGGAGTTACAGCCTATGCCGTGTCTGGAACTCCAGCAGATTGTGCATC
GTTGGGTGTCTCGCAAGCACTCTTTCCTTCGGTCCCTGACCTGGTAATCA
GTGGCATAAACATGGGTAGCAACTGTGGTTATCATGTTGTTTACTCTGGG
ACAGTTGCAGGTGCTCGAGAGGCTTTCTTTCATGGTGTACCGTCTGTCTC
TATATCATACGACTGGGTTGGAGGTAAGAGCAATGTTAATGATTACACAC
TCGCTGCTGAGGCTTGTTTACCTATTATAAATGCAATACTGGCCGAGATC
AGGAATCAAACTTATCCTGAAAGATGCTTTCTAAACATAGATCTACCTAC
AGATATTCCTAATAATAAGGGGTATAAACTTACTAAGCAGGGTACGAGCA
TATTCAAAATGGGGTGGAGACGAGTCACTTCTGAGATGCAAGGAGGGAAG
ATGTTATCAACAATGACAATGGACACAGATTCAGCAGTTACAATTGAAAC
AGATACATCTACCCC
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