CK935262

Overview
NameCK935262
Unique NameCK935262
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935262_ssr614 microsatellite CK935262_ssr614:614..628. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10604 contig Csv1_Contig10604:92..890. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935262 vs. ExPASy Swiss-Prot
Match: CAX3_ARATH (Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.548e-73
Identity = 152/260 (58.46%), Postives = 177/260 (68.08%), Query Frame = 3
Query:   48 EPW--LMENGSVKVLSK----EIRHGRTAHNMSSSSLRKKSDLTLVSKIRFPCLGRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGEIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAA---ASSDITAKATLQLSRASSIVTLIGYIAYLVFQLWTHREFFEA 800
            EPW  + ENG+  V +K    E+RHGRTAHNMSSSSLRKKSDL LV K+    L   L+N+QEVILGTKL++LF AIPLAI+   + +  P +F LSL+GLTPLAERVSFLTEQ+AFYTGPTVGGLLNATCGNATELIIAI AL   K+ VVKY                  F G IAN+R+EQ++DRKQADVN                 KYAA    S+ +  K +L LSR SSIV LI YIAYL+FQLWTHR+ FEA
Sbjct:    6 EPWAAIAENGNANVTAKGSSRELRHGRTAHNMSSSSLRKKSDLRLVQKVPCKTLKNILSNLQEVILGTKLTLLFLAIPLAILANSYNYGRPLIFGLSLIGLTPLAERVSFLTEQLAFYTGPTVGGLLNATCGNATELIIAILALANNKVAVVKYSLLGSILSNLLLVLGTSLFFGGIANIRREQRFDRKQADVNFFLLLMGLLCHLLPLLLKYAATGEVSTSMINKMSLTLSRTSSIVMLIAYIAYLIFQLWTHRQLFEA 265          
BLAST of CK935262 vs. ExPASy Swiss-Prot
Match: CAX1_ARATH (Vacuolar cation/proton exchanger 1 OS=Arabidopsis thaliana GN=CAX1 PE=1 SV=3)

HSP 1 Score: 270.396 bits (690), Expect = 8.197e-72
Identity = 148/260 (56.92%), Postives = 177/260 (68.08%), Query Frame = 3
Query:   45 TEPW-LMENGSVKVLSK----EIRHGRTAHNMSSSSLRKKSDLTLVSKIRFPCLGRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGEIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKY---AAASSDITAKATLQLSRASSIVTLIGYIAYLVFQLWTHREFFEA 800
            TEPW + ENG+  + +K    E+R GRTAHNMSSSSLRKKSDL ++ K+ +  L   L+N+QEVILGTKL++LFPAIP AII    G ++PW+F LSLLGLTPLAERVSFLTEQ+AFYTGPT+GGLLNATCGNATELIIAI AL   K+ VVKY                  FCG IAN+R+EQ++DRKQADVN                  Y     AS+ + +   L +SR  SIV LI YIAYLVFQLWTHR+ F+A
Sbjct:    6 TEPWSVAENGNPSITAKGSSRELRLGRTAHNMSSSSLRKKSDLRVIQKVPYKGLKDFLSNLQEVILGTKLAILFPAIPAAIICTYCGVSQPWIFGLSLLGLTPLAERVSFLTEQLAFYTGPTLGGLLNATCGNATELIIAILALTNNKVAVVKYSLLGSILSNLLLVLGTSLFCGGIANIRREQRFDRKQADVNFFLLLLGFLCHLLPLLVGYLKNGEASAAVLSDMQLSISRGFSIVMLISYIAYLVFQLWTHRQLFDA 265          
BLAST of CK935262 vs. ExPASy Swiss-Prot
Match: CAX1A_ORYSJ (Vacuolar cation/proton exchanger 1a OS=Oryza sativa subsp. japonica GN=CAX1a PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.402e-63
Identity = 138/239 (57.74%), Postives = 156/239 (65.27%), Query Frame = 3
Query:  102 HGR--TAHNMSSSSLRKKSDLTLVSKIRFPCLGRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGEIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAAS-----SDITAKATLQLSRASSIVTLIGYIAYLVFQLWTHREFFE 797
            HGR  TAHNMSSSSLRKKSD  LV K+    L   LAN+QEV L TKL+VLFPA+PLAI  QCF F + WVFALSLLGL PLAERVSFLTEQIA YTGPTVGGLLNATCGNATELIIA+FAL + KI+VVK                   FCG + NL   Q YDR Q+DV++                +YA A+     S  +A A+L LSRA S V L  Y+AYL FQL THR+ FE
Sbjct:   19 HGRSRTAHNMSSSSLRKKSDAALVRKVPVAPLRPLLANLQEVFLATKLAVLFPAVPLAIAAQCFRFDQVWVFALSLLGLIPLAERVSFLTEQIALYTGPTVGGLLNATCGNATELIIALFALLKGKIEVVKCSLLGSVLSNLLLVLGTSLFCGGVVNLGARQPYDRNQSDVSTALLFLAVLCHSAPLLLRYAVAAGEHSVSATSAAASLDLSRACSFVMLASYVAYLFFQLKTHRQLFE 257          
BLAST of CK935262 vs. ExPASy Swiss-Prot
Match: CAX1B_ORYSJ (Vacuolar cation/proton exchanger 1b OS=Oryza sativa subsp. japonica GN=CAX1b PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.972e-55
Identity = 122/233 (52.36%), Postives = 145/233 (62.23%), Query Frame = 3
Query:  108 RTAHNMSSSSLRKKSDLTLVSKIRFPCLGRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGEIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSD---ITAKATLQLSRASSIVTLIGYIAYLVFQLWTHREFFE 797
            RTAHN+SSSSLRK SD +L+ K+    L   LAN+ +V+L T+L +LFPA+ LAI      F + WVF LSL+GL PLAER+SFLTEQIAFYTGPTVGGLLNAT GN TE+IIA+ AL E KI+VVK                   F   IANLR  Q YD KQA VN+                +YA  S D   ++  A L LSRA SI+ LI Y+AYL FQL THR+ FE
Sbjct:   31 RTAHNLSSSSLRKSSDASLLHKVPCAALRSLLANLNDVLLTTRLFLLFPAVLLAIAATYLHFGQVWVFVLSLIGLVPLAERLSFLTEQIAFYTGPTVGGLLNATFGNVTEVIIALLALREGKIEVVKCSLLGSILSNLLLVLGTSLFLAGIANLRAHQPYDTKQAHVNTALLMLAVLCHSLPLMLRYAVTSGDHAIVSGDAALHLSRACSILMLIAYLAYLFFQLNTHRQLFE 263          
BLAST of CK935262 vs. ExPASy Swiss-Prot
Match: CAX4_ARATH (Vacuolar cation/proton exchanger 4 OS=Arabidopsis thaliana GN=CAX4 PE=1 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 3.826e-53
Identity = 116/245 (47.35%), Postives = 156/245 (63.67%), Query Frame = 3
Query:   57 LMENG---SVKVLSKEIRHGRTAHNMSSSSL-RKKSDLTLVSKIRFPCLGRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGEIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITAKATLQLSRASSIVTLIGYIAYLVFQLWT 779
            L+ENG   S K  ++  R  R    +S+SSL RK+SDL L+S++R+  + R L N+QEV+LGTKL +LFPA+PLA++   +     WVFALSLLGLTPLAER+SFLTEQIAF+TGPTVGGL+NATCGNATE+IIAI A+ +RK+ +VK                   F G I+NLRK Q +D +Q D+NS                ++   + +      + LSRASS V LI Y+A+L+F L++
Sbjct:   14 LLENGGGGSDKPTAETSR--RVRRTVSASSLIRKRSDLKLISRVRWEFMRRILTNLQEVLLGTKLFILFPAVPLAVVAHRYDCPRAWVFALSLLGLTPLAERISFLTEQIAFHTGPTVGGLMNATCGNATEMIIAILAVGQRKMRIVKLSLLGSILSNLLFVLGTSLFLGGISNLRKHQSFDPRQGDMNSMLLYLALLCQTLPMIMRFTMEAEEYDGSDVVVLSRASSFVMLIAYLAFLIFHLFS 256          
BLAST of CK935262 vs. ExPASy Swiss-Prot
Match: CAX1C_ORYSJ (Vacuolar cation/proton exchanger 1c OS=Oryza sativa subsp. japonica GN=CAX1c PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.359e-41
Identity = 95/225 (42.22%), Postives = 131/225 (58.22%), Query Frame = 3
Query:  126 SSSSLRKKSDLTLVSKIRFPCLGRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGEIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSD-ITAKATLQLSRASSIVTLIGYIAYLVFQLWTHREFFE 797
            SSSS+  +   +  S +    LG   A +QEV+LGTKL  LF A+PLA+  +       WVFA SL+GL PLAERVSFL+E IA   GPT GG++NATCGN  ELIIA+FAL++ K++++K+                    G I N+ KE+  D++QADV+                 KY +++ D I + + +QLSR+ +IV LI Y   L+FQL THR+ FE
Sbjct:   44 SSSSMTGRKIKSEASPLLRRLLGGPAAQLQEVLLGTKLYPLFSAVPLAVAAESLRLGRVWVFAFSLIGLAPLAERVSFLSEHIANTVGPTAGGIMNATCGNVPELIIALFALHKNKMEILKWSLLGSILSNLLLVLGSSLLFGGIVNIGKERPLDKRQADVSIGLLLLGVLCHIATLVSKYTSSTGDSINSSSVMQLSRSCAIVMLIAYFGSLMFQLKTHRQIFE 268          
BLAST of CK935262 vs. ExPASy Swiss-Prot
Match: CAX2_ARATH (Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.729e-29
Identity = 83/192 (43.23%), Postives = 107/192 (55.73%), Query Frame = 3
Query:  201 LANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGEIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITA-KATLQLSRASSIVTLIGYIAYLVFQL 773
            L +I+ VI   KL++L P  PLAI+      ++ WVF L+L+G+TPLAER+ + TEQ+A YTGPTVGGLLNAT GN TELII+IFAL    I VV+                   FCG +   +K+Q +D+  A VNS                 Y    S++ A  + L LSR SS + LI Y AYL FQL
Sbjct:   65 LNSIKIVIFCNKLNLLLPFGPLAILVHYMIDSKGWVFLLTLVGITPLAERLGYATEQLACYTGPTVGGLLNATFGNVTELIISIFALKNGMIRVVQLTLLGSILSNMLLVLGCAFFCGGLVFYQKDQVFDKGIATVNSGLLLMAVMGILFPAVLHY--THSEVHAGSSELALSRFSSCIMLIAYAAYLFFQL 254          
BLAST of CK935262 vs. ExPASy Swiss-Prot
Match: CAX5_ARATH (Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.950e-29
Identity = 82/192 (42.71%), Postives = 105/192 (54.69%), Query Frame = 3
Query:  201 LANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGEIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITA-KATLQLSRASSIVTLIGYIAYLVFQL 773
            L + + VIL  KL++L P  PLAI+       + W+F LSL+G+TPLAER+ + TEQ+A YTG TVGGLLNAT GN TELII+IFAL    I VV+                   FCG +   +KEQ +D+  A VNS                 Y    S++ A  + L LSR SS + L+ Y AYL FQL
Sbjct:   65 LQSFKIVILSNKLNLLLPFGPLAILLHYLTDNKGWIFLLSLVGITPLAERLGYATEQLACYTGSTVGGLLNATFGNVTELIISIFALKSGMIRVVQLTLLGSILSNMLLVLGCAFFCGGLVFSQKEQVFDKGNAVVNSGLLLMAVMGLLFPAVLHY--THSEVHAGSSELALSRFSSCIMLVAYAAYLFFQL 254          
BLAST of CK935262 vs. ExPASy Swiss-Prot
Match: CAX2_ORYSJ (Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=CAX2 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.239e-27
Identity = 73/201 (36.32%), Postives = 108/201 (53.73%), Query Frame = 3
Query:  195 RCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFA-EPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGEIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITAKATLQLSRASSIVTLIGYIAYLVFQLWTHREFF 794
            R L +++ VIL  K++VL P  PLA++        + WVF  SL+G+TPLAER+ + TEQ+A YTGPT+GGLLNAT GNATE+II+++AL    I VV+                   F G + +  ++Q +++  A VNS                 +  +      K+ + LSR SS + L+ Y +YL FQL + R  +
Sbjct:   59 RALTSVRVVILQAKINVLLPFGPLAVMLHYLSANHQGWVFLFSLIGITPLAERLGYATEQLALYTGPTIGGLLNATFGNATEMIISLYALKNGMIRVVQQSLLGSILSNMLLVLGCAFFAGGLVHPSRDQVFNKASAVVNSGLLLMAVLGLMFPAVLHFTHSEVQY-GKSEVSLSRFSSCIMLVAYASYLFFQLKSQRSLY 258          
BLAST of CK935262 vs. ExPASy Swiss-Prot
Match: CAX6_ARATH (Putative vacuolar cation/proton exchanger 6 OS=Arabidopsis thaliana GN=CAX6 PE=3 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 6.800e-26
Identity = 76/193 (39.38%), Postives = 101/193 (52.33%), Query Frame = 3
Query:  219 VILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGEIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITA-KATLQLSRASSIVTLIGYIAYLVFQLWTHREFF 794
            VIL  KL++L P  PLAI+       + W F LSL+G+TPLAER+ + TEQ++ YTG TVGGLLNAT GN  ELII+I AL    I VV+                   FCG +    K+Q +D++ A V+S                 Y    S++ A  + L LSR  S + L+ Y AYL FQL +   F+
Sbjct:   82 VILSNKLNLLLPFGPLAILVHYLTDNKGWFFLLSLVGITPLAERLGYATEQLSCYTGATVGGLLNATFGNVIELIISIIALKNGMIRVVQLTLLGSILSNILLVLGCAFFCGGLVFPGKDQVFDKRNAVVSSGMLLMAVMGLLFPTFLHY--THSEVHAGSSELALSRFISCIMLVAYAAYLFFQLKSQPSFY 272          
The following BLAST results are available for this feature:
BLAST of CK935262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CAX3_ARATH2.548e-7358.46Vacuolar cation/proton exchanger 3 OS=Arabidopsis ... [more]
CAX1_ARATH8.197e-7256.92Vacuolar cation/proton exchanger 1 OS=Arabidopsis ... [more]
CAX1A_ORYSJ1.402e-6357.74Vacuolar cation/proton exchanger 1a OS=Oryza sativ... [more]
CAX1B_ORYSJ6.972e-5552.36Vacuolar cation/proton exchanger 1b OS=Oryza sativ... [more]
CAX4_ARATH3.826e-5347.35Vacuolar cation/proton exchanger 4 OS=Arabidopsis ... [more]
CAX1C_ORYSJ3.359e-4142.22Vacuolar cation/proton exchanger 1c OS=Oryza sativ... [more]
CAX2_ARATH1.729e-2943.23Vacuolar cation/proton exchanger 2 OS=Arabidopsis ... [more]
CAX5_ARATH2.950e-2942.71Vacuolar cation/proton exchanger 5 OS=Arabidopsis ... [more]
CAX2_ORYSJ1.239e-2736.32Vacuolar cation/proton exchanger 2 OS=Oryza sativa... [more]
CAX6_ARATH6.800e-2639.38Putative vacuolar cation/proton exchanger 6 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004563_H07 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935262 ID=CK935262; Name=CK935262; organism=Citrus sinensis; type=EST; length=800bp
TTTTTTTTTTTTCTTTCAATTGCATTTGTGAAAAAATGGCTTCGACTGAA
CCATGGCTGATGGAGAATGGCAGCGTGAAGGTTTTGAGCAAGGAGATCAG
ACATGGAAGAACTGCACACAACATGTCATCCTCCTCGTTGAGGAAAAAAT
CCGATCTTACCCTTGTCTCGAAAATTCGATTCCCTTGTCTTGGACGGTGT
CTGGCTAATATCCAGGAGGTCATTTTGGGGACTAAACTTTCAGTTCTCTT
TCCCGCCATTCCTTTAGCCATAATCGGCCAGTGTTTTGGATTTGCAGAAC
CATGGGTATTCGCTCTGAGCTTACTAGGACTGACTCCTCTGGCTGAACGT
GTCAGCTTCTTGACAGAGCAAATTGCTTTCTACACTGGCCCAACAGTGGG
GGGATTATTGAACGCGACATGCGGCAATGCCACGGAGCTCATCATAGCAA
TTTTTGCCCTATACGAACGTAAAATTGACGTGGTCAAATATTCTCTTTTG
GGTTCCATTCTCTCAAACCTTCTTCTGGTTCTTGGCACTTCGCTCTTCTG
TGGAGAGATTGCCAATCTCAGAAAGGAACAAAAATACGATAGAAAACAAG
CCGATGTCAACTCGCTGCTGCTGCTGCTGGCATTGCTGTGCCACATGTTA
CCATTGCTATTCAAATACGCTGCGGCCTCCTCTGATATTACTGCCAAGGC
GACCCTTCAGCTATCAAGAGCCAGCAGCATTGTAACGCTGATTGGTTACA
TCGCCTATCTCGTCTTCCAATTGTGGACACACCGGGAATTTTTTGAAGCT
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