CK935263

Overview
NameCK935263
Unique NameCK935263
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935263_ssr659 microsatellite CK935263_ssr659:659..670. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9509 contig Csv1_Contig9509:1..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935263 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.228e-32
Identity = 65/161 (40.37%), Postives = 100/161 (62.11%), Query Frame = 3
Query:   72 SKYFLILLAIFYHINSSSASRNVPSKITASTEFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKISKSLGMKPREVEAMQDCLEELSDSVDELRKSIGEMGLI---KASNFELTMNDIQTWVSAALTDETTCSDGFEKK 545
            SK  L+  A+   + ++SA+         + +FIKTSC+ TTYP +C +SL+ +A  IQ +P+ LA  +L V+L   +     M +++K  G+K R+  A+ DCLEE+ DS+D + +S  EM  +   K ++F   M++++TWVSAALTDETTC DGF  K
Sbjct:    4 SKSTLVFSALLVILAAASAA--------PANQFIKTSCTLTTYPAVCEQSLSAYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRLNKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALTDETTCMDGFAGK 156          

HSP 2 Score: 37.3502 bits (85), Expect = 2.228e-32
Identity = 17/34 (50.00%), Postives = 27/34 (79.41%), Query Frame = 1
Query:  550 VNGKV---VRGQIVKIAHMTSNALALINSYASLH 642
            ++GK+   VR Q+V +A +TSNALAL+N++A+ H
Sbjct:  158 MDGKIKESVRAQVVAVARVTSNALALVNNFAAKH 191          
BLAST of CK935263 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.624e-21
Identity = 62/177 (35.03%), Postives = 101/177 (57.06%), Query Frame = 3
Query:   24 YSEFRKRAREKMESSSSKYFLILLAIFYHINSSSASRNVPSKITA----STEFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAMAKSTS-AVMLKISKSLGMKPREVEAMQDCLEELSDSVDELRKSIGEMGLI-KASNFELTMNDIQTWVSAALTDETTCSDGF 536
            +S+F+    +K+  SS+   L+LLA    I +++ ++N   KIT     S   +K+ CSST YP LC+ ++A       TS K +  ASLN+T    K    AV   I+K  G+ PREV A+ DCLE + +++DEL  ++ ++    K  +     +D++T +S+A+T++ TC DGF
Sbjct:   11 FSDFKNN--KKLILSSAAIALLLLASIVGIAATTTNQNKNQKITTLSSTSHAILKSVCSSTLYPELCFSAVAATGGKELTSQKEVIEASLNLTTKAVKHNYFAVKKLIAKRKGLTPREVTALHDCLETIDETLDELHVAVEDLHQYPKQKSLRKHADDLKTLISSAITNQGTCLDGF 185          

HSP 2 Score: 23.8682 bits (50), Expect = 3.624e-21
Identity = 12/26 (46.15%), Postives = 18/26 (69.23%), Query Frame = 1
Query:  550 VNGKVVRGQIVKIAHMTSNALALINS 627
            V   +++GQ V + HM SNALA+I +
Sbjct:  194 VRKALLKGQ-VHVEHMCSNALAMIKN 218          
BLAST of CK935263 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 7.382e-18
Identity = 52/175 (29.71%), Postives = 97/175 (55.43%), Query Frame = 3
Query:   21 IYSEFRKRAREKMESSSSKYFLILLAIFYHINSSSASRNVPSKITASTEFI-KTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTL-AMAKSTSAVMLKISKSLGMKPREVEAMQDCLEELSDSVDELRKSIGEMGLIKA-SNFELTMNDIQTWVSAALTDETTCSDGF 536
            I+S+   +  +K+   S+   L+ +A    I++ ++  N    ++ S+  + ++SCSST YP LC  ++     +  TS K +  AS+N+T+ A+  +   V   I K  G+ PRE  A+ DCLE + +++DEL +++ ++ L            D++T +S+A+T++ TC DGF
Sbjct:    8 IFSKDNFKKNKKLVLLSAAVALLFVAAVAGISAGASKANEKRTLSPSSHAVLRSSCSSTRYPELCISAVVTAGGVELTSQKDVIEASVNLTITAVEHNYFTVKKLIKKRKGLTPREKTALHDCLETIDETLDELHETVEDLHLYPTKKTLREHAGDLKTLISSAITNQETCLDGF 182          

HSP 2 Score: 23.8682 bits (50), Expect = 7.382e-18
Identity = 12/26 (46.15%), Postives = 18/26 (69.23%), Query Frame = 1
Query:  550 VNGKVVRGQIVKIAHMTSNALALINS 627
            V   +++GQI  + HM SNALA+I +
Sbjct:  191 VRKALLKGQI-HVEHMCSNALAMIKN 215          
BLAST of CK935263 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.179e-14
Identity = 44/154 (28.57%), Postives = 89/154 (57.79%), Query Frame = 3
Query:   87 ILLAIFYHINSSSASRNVPSKITASTEFIKTSCSSTTYPTLCYKSLARHASLIQ--TSPKLLAHASLNVTL-AMAKSTSAVMLKISKSLGMKPREVEAMQDCLEELSDSVDELRKSIGEMGLI-KASNFELTMNDIQTWVSAALTDETTCSDGF 536
            ++  +  H  +S    ++ +  +++   +K++CS+T +P LCY ++   +   +  TS K +   SLN+T+ A+ ++  AV   I    G+ PRE  A+ DCLE + +++DEL  ++ ++ L     + +  + D++T +S+A+T++ TC DGF
Sbjct:   38 VVAGVKSHSKNSDDHADIMAISSSAHAIVKSACSNTLHPELCYSAIVNVSDFSKKVTSQKDVIELSLNITVKAVRRNYYAVKELIKTRKGLTPREKVALHDCLETMDETLDELHTAVEDLELYPNKKSLKEHVEDLKTLISSAITNQETCLDGF 191          
BLAST of CK935263 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.481e-14
Identity = 44/125 (35.20%), Postives = 72/125 (57.60%), Query Frame = 3
Query:  171 IKTSCSSTTYPTLCYKSLAR--HASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKISKSLGMKPREVEAMQDCLEELSDSVDELRKSIGEM-GLIKASNFELTMNDIQTWVSAALTDETTCSDGF 536
            +K+SCSST YP LC+ ++A    AS   TS K +   SLN+T    +     + K+ K   +  RE  A+ DCLE + +++DEL K++ ++       +     +D++T +SAA+T++ TC DGF
Sbjct:   69 LKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGF 193          
BLAST of CK935263 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.481e-14
Identity = 44/125 (35.20%), Postives = 72/125 (57.60%), Query Frame = 3
Query:  171 IKTSCSSTTYPTLCYKSLAR--HASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKISKSLGMKPREVEAMQDCLEELSDSVDELRKSIGEM-GLIKASNFELTMNDIQTWVSAALTDETTCSDGF 536
            +K+SCSST YP LC+ ++A    AS   TS K +   SLN+T    +     + K+ K   +  RE  A+ DCLE + +++DEL K++ ++       +     +D++T +SAA+T++ TC DGF
Sbjct:   69 LKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGF 193          
BLAST of CK935263 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.643e-14
Identity = 45/156 (28.85%), Postives = 73/156 (46.79%), Query Frame = 3
Query:   84 LILLAIFYHINSSSASRNVPSKITASTEFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKISKSLGMKPREVEAMQDCLEELSDSVDELRKSIGEMGLIKASNFELTMNDIQTWVSAALTDETTCSDGFEKKYG 551
            ++   IF  I +  + +  P      T+ I  +CS + YP LC  +L      +      L H S N TL            I+ +  M PR   A   CLE L DSVD L +++  + ++       + +D+ TW+S+A+T+  TC+DGF++  G
Sbjct:   46 VVCFGIFAGIRAVDSGKTEPKLTRKPTQAISRTCSKSLYPNLCIDTLLDFPGSLTADENELIHISFNATLQKFSKALYTSSTITYT-QMPPRVRSAYDSCLELLDDSVDALTRALSSVVVVSGDE---SHSDVMTWLSSAMTNHDTCTDGFDEIEG 197          
BLAST of CK935263 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.883e-12
Identity = 54/172 (31.40%), Postives = 86/172 (50.00%), Query Frame = 3
Query:   39 KRAREKMESSSSKYFLILL---AIFYHINSS-SASRNVPSKITASTEFIKTSCSSTTYPTLCYKSLARH-ASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKISKSLGMKPREVEAMQDCLEELSDSVDELRKSIGEMGLIKASNFELTMNDIQTWVSAALTDETTCSDGFE 539
            +R+++K+  SS    + L+   AIF  + S    +++VP      ++ I  +C  T +P LC  SL     SL  +S K L H ++N+TL            +S  + M PR   A   C+E L DSVD L +++  +    A        D+ TW+SAALT+  TC++GF+
Sbjct:   39 RRSKKKLVVSSIVLAISLILAAAIFAGVRSRLKLNQSVPGLARKPSQAISKACELTRFPELCVDSLMDFPGSLAASSSKDLIHVTVNMTLHHFSHALYSSASLS-FVDMPPRARSAYDSCVELLDDSVDALSRALSSVVSSSAKP-----QDVTTWLSAALTNHDTCTEGFD 204          
BLAST of CK935263 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.056e-11
Identity = 41/139 (29.50%), Postives = 69/139 (49.64%), Query Frame = 3
Query:  117 SSSASRNVPSKITASTEFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKISKSLGMKPREVEAMQDCLEELSDSVDELRKSIGEMGLIKAS-NFELTMNDIQTWVSAALTDETTCSD 530
            SS +S +VP    +    +K  C +T YP+ C+ S++       T P+LL   SL V +      S+   K+  +     R  +A+  C     D++D L  SI  +G +        ++++++TW+SAALTD+ TC D
Sbjct:   59 SSPSSDSVPQTELSPAASLKAVCDTTRYPSSCFSSISSLPESNTTDPELLFKLSLRVAI---DELSSFPSKLRANAEQDARLQKAIDVCSSVFGDALDRLNDSISALGTVAGRIASSASVSNVETWLSAALTDQDTCLD 194          
The following BLAST results are available for this feature:
BLAST of CK935263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
21KD_DAUCA2.228e-3240.3721 kDa protein OS=Daucus carota PE=2 SV=1[more]
PME2_ARATH3.624e-2135.03Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PME3_ARATH7.382e-1829.71Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PMEU1_SOLLC1.179e-1428.57Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME3_CITSI4.481e-1435.20Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI4.481e-1435.20Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PME61_ARATH7.643e-1428.85Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME34_ARATH1.883e-1231.40Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME3_PHAVU6.056e-1129.50Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004563_H08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935263 ID=CK935263; Name=CK935263; organism=Citrus sinensis; type=EST; length=792bp
GGGGGATCACAATATAGCCCATATATTCAGAATTCAGAAAAAGAGCAAGA
GAGAAAATGGAATCTTCATCATCAAAATATTTCCTCATTTTACTAGCCAT
TTTTTACCACATAAACTCAAGCTCAGCATCCAGAAATGTCCCCTCTAAAA
TTACAGCTAGCACTGAGTTCATCAAAACATCTTGCAGTTCAACAACCTAT
CCAACACTTTGCTATAAATCCCTTGCTAGACATGCAAGCTTAATCCAAAC
AAGCCCTAAGCTCCTCGCCCATGCATCCCTCAACGTGACCCTTGCAATGG
CTAAATCAACGTCAGCCGTCATGTTAAAGATATCGAAAAGCCTTGGAATG
AAGCCTAGAGAGGTGGAAGCCATGCAAGATTGTTTGGAGGAGCTGAGTGA
TTCAGTTGATGAACTCAGAAAGTCTATTGGCGAAATGGGTCTGATCAAAG
CTTCTAACTTTGAACTCACAATGAATGATATACAGACTTGGGTTAGTGCT
GCTTTGACTGATGAGACTACTTGCAGCGATGGATTTGAAAAAAAATACGG
TTAATGGGAAAGTCGTGAGAGGCCAGATTGTGAAGATTGCCCATATGACT
AGCAATGCCTTGGCTTTGATCAATAGTTATGCTTCGCTTCATGCTTAATT
AGAAACTGTGATGATGATGAGCTTCAGCATTAATGTTAACTCACATATGT
GTATATTGTTAATCTTTTGTCGGGAAATAAAATTCTATTTAATATTGGTC
ATGTATCTTTAATATATTCCTACTGTAAGACAAAATGAGAAC
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