CK935268

Overview
NameCK935268
Unique NameCK935268
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1493 contig Csv1_Contig1493:2..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK935268 vs. ExPASy Swiss-Prot
Match: CI023_MOUSE (Alba-like protein C9orf23 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.649e-12
Identity = 42/136 (30.88%), Postives = 66/136 (48.53%), Query Frame = 2 
Query:   68 MDRYQRV-------EKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWXXXXXXXXXXXTT--RHVSMITITLSKKELNRSSVGYQPP 448
            M++Y+R          P  + P D  E+R+    ++R+ +  A+  L+   +  +VF   GRA  K V+  E++KRR+ GLHQ T +      D+W            T  RHV  + + LS+  L+ S  GYQPP
Sbjct:    1 MEQYRRAGSVELPASSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVLLSRDPLDPSECGYQPP 136
[Close]
BLAST of CK935268 vs. ExPASy Swiss-Prot
Match: CI023_HUMAN (Alba-like protein C9orf23 OS=Homo sapiens GN=C9orf23 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.182e-12
Identity = 38/120 (31.67%), Postives = 60/120 (50.00%), Query Frame = 2 
Query:   95 PKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWXXXXXXXXXXXTT--RHVSMITITLSKKELNRSSVGYQPP 448
            P  + P D  E+R+    ++R+ +  A+  L+   +  +VF   GRA  K V+  E++KRR+ GLHQ T +      D+W            T  RHV  + + LS+  L+ +  GYQPP
Sbjct:   17 PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPP 136
The following BLAST results are available for this feature:
BLAST of CK935268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CI023_MOUSE1.649e-1230.88Alba-like protein C9orf23 homolog OS=Mus musculus ... [more]
CI023_HUMAN8.182e-1231.67Alba-like protein C9orf23 OS=Homo sapiens GN=C9orf... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004563_G06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935268 ID=CK935268; Name=CK935268; organism=Citrus sinensis; type=EST; length=859bp
GGGGGGGGCATAAAAGAAGAAACGTAGCCGTAGAAGAGGGCGCTTTATCT
TCAAAGAGTGAAGAAAGATGGATCGGTACCAAAGAGTGGAGAAGCCAAAA
GCAGAGACACCGATTGACGAGAATGAAATTCGGATTACGAGTCAAGGGAG
GATGCGCAGCTACATCACTTATGCTATGACTCTGCTTCAGGAAAGAGGTT
CCAATGAGATTGTATTCAAGGCAATGGGAAGGGCTATCAATAAGACTGTA
ACAATAGTGGAGCTAATAAAAAGAAGAATTGTTGGCCTTCATCAGAATAC
AGTTATTGGATCCACGGACATAACTGATACGTGGGAGCCTTTGGAGGAAG
GGCTTCTTCCGTTGGAAACCACAAGGCATGTGTCAATGATTACAATAACT
CTTTCAAAGAAGGAACTGAATAGGTCTTCTGTTGGGTATCAGCCTCCACT
GCCTGCTGAACAAGTTAAGCCATTGATAGAATTTGATTATGATGGAGAGG
GCTCACCTAATGGACCCCGTAGGGGTCGGAGTGGTAGAGGAAGGTCAAGA
GGAAGAGGTAATGGTTTTGTGTCTGCTGAATATGAGGATGGAGGTTGGGA
CCGCAATAATCGGGGCTATTCTAGAGGTAGGGGTCGAGGGAGAGGACGTA
GTTTCCGTGGCCGTGGGAGAGGAGGATATAATGGACCTCATTTTGATGCA
AGGCAAGATGGAGGCTACAATTATGAAGCACCTCCTCAAGGCAGTGGTCG
TGGCCGTGGAGGGGGAAACCGTGGTAGGGGCCGTGGCAATAGAGNNNATG
GGCCGATCCAGGCAGCTGCATGAGACTGGGTGGATCTCCCTGGAATGTGA
TGCACAAAT
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