CK935270

Overview
NameCK935270
Unique NameCK935270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935270_ssr719 microsatellite CK935270_ssr719:719..734. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6277 contig Csv1_Contig6277:19..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 8.432e-28
Identity = 64/113 (56.64%), Postives = 76/113 (67.26%), Query Frame = 2
Query:  197 LHDTVKEGWI-SFDQLDGKSTPHAPPQAQASGFRLQKAATMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIAS 532
            L D V  GW  S   +   +  + PP  +ASG    +   M         YRGVR+RPWGKFAAEIRD KKNG+R+WLGTY+TPE AA+AYDRAAF++RGSKAKLNFP LI S
Sbjct:   50 LRDAVSSGWTPSVPPVTSPAEENKPPATKASGSHAPRQKGM--------QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPHLIGS 154          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.387e-24
Identity = 64/132 (48.48%), Postives = 81/132 (61.36%), Query Frame = 2
Query:  197 LHDTVKEGWISFDQLDGKSTPH--------APPQAQASGFRLQKAATMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVEPQPHGITKK 568
            L D +  GW  F+   G+            +P +  A+      AA + R  H    YRGVR+RPWGKFAAEIRD  KNG+R+WLGTY+T E AA+AYD+AA++MRGSKA LNFP  I  N EP+P  +T K
Sbjct:   57 LKDALNVGWSPFNFSAGEVKSEQREEEIVVSPAETTAA-----PAAELPRGRH----YRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPHRIGLN-EPEPVRVTAK 178          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.648e-24
Identity = 63/130 (48.46%), Postives = 79/130 (60.77%), Query Frame = 2
Query:  197 LHDTVKEGWISFD----QLDGKSTPHAPPQAQASGFRLQKAATMTREIHVRV--NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVEPQPHGITKK 568
            L D +  GW  F+    ++  +      P           A T T +  V    +YRGVR+RPWGKFAAEIRD  KNG+R+WLGTY+T E AALAYD+AA++MRGSKA LNFP  I  N EP+P  +T K
Sbjct:   48 LSDALTTGWTPFNLTSTEIKAEPREEIEPATSPVPSVAPPAETTTAQAVVPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIGLN-EPEPVRLTVK 176          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.646e-23
Identity = 53/76 (69.74%), Postives = 63/76 (82.89%), Query Frame = 2
Query:  341 NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVEPQPHGITKK 568
            +YRGVR+RPWGKFAAEIRD  KNG+R+WLGTY+T E AALAYD+AA++MRGSKA LNFP  I  N EP+P  +T K
Sbjct:   98 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIGLN-EPEPVRLTAK 172          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.067e-22
Identity = 55/90 (61.11%), Postives = 66/90 (73.33%), Query Frame = 2
Query:  299 QKAATMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVEPQPHGITKK 568
            +KA  +T       +YRGVR+RPWGKFAAEIRD  KNG+R+WLGT++T E AALAYD AAF+MRGS+A LNFP  + S  EP P  IT K
Sbjct:  102 KKAIPVTETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLRVNSG-EPDPVRITSK 190          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.819e-22
Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 2
Query:  341 NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVEPQPHGITKK 568
            +YRGVR+RPWGKFAAEIRD  KNG+R+WLGT++T E AALAYDRAAF+MRGS+A LNFP  + S  EP P  I  K
Sbjct:  147 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRVNSG-EPDPVRIKSK 221          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.104e-22
Identity = 51/76 (67.11%), Postives = 62/76 (81.58%), Query Frame = 2
Query:  341 NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVEPQPHGITKK 568
            +YRGVR+RPWGKFAAEIRD  KNG+R+WLGTY++ E AALAY +AAF+MRG+KA LNFP  I  N EP+P  +T K
Sbjct:  106 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFPHRIGLN-EPEPVRVTVK 180          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.304e-20
Identity = 45/63 (71.43%), Postives = 56/63 (88.89%), Query Frame = 2
Query:  344 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIAS 532
            YRGVR+RPWGK+AAEIRD  ++G+R+WLGT++T E AALAYDRAAF+MRG+KA LNFPS I +
Sbjct:   59 YRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPSEIVN 121          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.224e-20
Identity = 52/102 (50.98%), Postives = 69/102 (67.65%), Query Frame = 2
Query:  230 FDQLDGKSTPHAPPQAQASGFR------LQKAATMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP 517
            F Q++G+S+  + P+  +S         ++KA     E+  R +YRGVR+RPWGKFAAEIRD  K GSR+WLGT+++   AA AYD AAFK+RG KA LNFP
Sbjct:   67 FLQVEGESSSSSSPELNSSSSTYETDQSVKKAERFEEEVDAR-HYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFP 167          
BLAST of CK935270 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.104e-19
Identity = 56/116 (48.28%), Postives = 74/116 (63.79%), Query Frame = 2
Query:  188 CEALHDTVKEGWISFDQLDGKSTPHAPPQAQASGFRLQKAATMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASN 535
            C  L ++    ++S  +L G+  P +    Q+S   LQ+ +   +      NYRGVR+RPWGK+AAEIRD  K  +R+WLGT+DT E AALAYD+AAF+ RG KAKLNFP  I  N
Sbjct:   26 CSTLSESDVSDFVS--ELTGQPIPSSIDD-QSSSLTLQEKSNSRQR-----NYRGVRQRPWGKWAAEIRDPNK-AARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFPEHIRVN 132          
The following BLAST results are available for this feature:
BLAST of CK935270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
ERF99_ARATH8.432e-2856.64Ethylene-responsive transcription factor 13 OS=Ara... [more]
ERF1_TOBAC7.387e-2448.48Ethylene-responsive transcription factor 1 OS=Nico... [more]
ERF2_NICSY9.648e-2448.46Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF2_TOBAC1.646e-2369.74Ethylene-responsive transcription factor 2 OS=Nico... [more]
EF101_ARATH1.067e-2261.11Ethylene-responsive transcription factor 2 OS=Arab... [more]
EF100_ARATH1.819e-2268.42Ethylene-responsive transcription factor 1A OS=Ara... [more]
ERF1_SOLLC3.104e-2267.11Ethylene-responsive transcription factor 1 OS=Sola... [more]
PTI5_SOLLC1.304e-2071.43Pathogenesis-related genes transcriptional activat... [more]
EF106_ARATH2.224e-2050.98Ethylene-responsive transcription factor ERF106 OS... [more]
EF112_ARATH1.104e-1948.28Ethylene-responsive transcription factor ERF112 OS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004563_G08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935270 ID=CK935270; Name=CK935270; organism=Citrus sinensis; type=EST; length=878bp
GGGGAAACACAGTACAGATCACTCTCAAATCCAAGAANNNACAGCAAAAT
CATAACATCATATTCCCCGGCAAATTAAATTCAAGCTTAACTTTTCGTTT
ACAGATTAAAGTTTCAGCTTCAGTGATACACATAAACTCTTGAACTCAAG
CCCTAACTCTGATTCAATCCATTGAAATATGGAGGATTGCGAAGCTTTAC
ACGACACTGTTAAGGAGGGGTGGATTTCGTTTGATCAGCTTGATGGAAAG
TCGACGCCTCATGCTCCGCCTCAGGCTCAGGCTAGTGGATTTCGTTTACA
GAAGGCAGCCACGATGACACGTGAGATTCACGTGCGTGTAAATTATCGAG
GTGTGAGGAAGAGGCCGTGGGGAAAGTTTGCTGCGGAGATAAGGGATCGT
AAAAAGAATGGCTCACGACTTTGGCTGGGGACCTATGATACGCCTGAGGG
TGCTGCGTTGGCTTATGATAGAGCCGCTTTCAAGATGCGCGGCTCAAAAG
CCAAGCTTAATTTTCCAAGCCTCATTGCCTCAAACGTTGAGCCTCAGCCT
CACGGAATTACGAAAAAGAATATGGCTTCTTCTTCGTCATCCTCATCCAT
CGCTGCAGATTAAATCTCCGAATTTGGGTTTAATTAGCTGAGAAATAATA
TTTCTACTTATTTTTGAAGTAATTGACATTAATTCGCCTTTTATTAATAT
TAATGTTGTGTGTATATATATGTATGTATGTATGATGTATCTGCCCTGCT
TCATGTATCGTTTGGGTGATTTGATGATCCGTAATTGTAACAACTGGTGC
AATTCATAACTTGACCCCAGTCCATCGATCAATGTACGTAACGATTTTCT
TAAAAAAAAAAAAAAAAAAAAAAAAAAA
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