CK935329

Overview
NameCK935329
Unique NameCK935329
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7080 contig Csv1_Contig7080:1127..1876. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935329 vs. ExPASy Swiss-Prot
Match: CCD1_PEA (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 5.473e-83
Identity = 151/177 (85.31%), Postives = 163/177 (92.09%), Query Frame = 1
Query:    7 GAVKEKLENFSNELYEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIVKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPQRVPYGFHAFFVSEEQLEEQAK 537
            GAVKEKL+NFSNELYEMRFN+KTG ASQK+LSAS VDFPRVNE YTGRKQRYVYGT LDSI KVTGIIKFDLHAEPD  KTKLEVGGNV+G++DLGPGRFGSEAV+VPR PGT SEED GYLIFF HDE TGKS V+VIDAK MSA+PVAVVELPQRVPYGFHAFFV+E+QL+EQAK
Sbjct:  364 GAVKEKLDNFSNELYEMRFNMKTGEASQKKLSASTVDFPRVNESYTGRKQRYVYGTTLDSIAKVTGIIKFDLHAEPDSGKTKLEVGGNVQGLYDLGPGRFGSEAVYVPRVPGTDSEEDDGYLIFFVHDENTGKSFVHVIDAKRMSAEPVAVVELPQRVPYGFHAFFVTEDQLQEQAK 540          
BLAST of CK935329 vs. ExPASy Swiss-Prot
Match: CCD1_PHAVU (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 2.542e-80
Identity = 146/178 (82.02%), Postives = 159/178 (89.33%), Query Frame = 1
Query:    7 GAVKEKLENFSNELYEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIVKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPQRVPYGFHAFFVSEEQLEEQAKL 540
            G V+EKLENFSNELYEMRFN+KTG ASQK+LSAS VDFPRVNE YTGRKQRYVYGT LDSI KVTGIIKFDLHAEPD  K KLEVGGNV+G++DLGPG+FGSEAV++PR PG  SEED GYL+ F HDE  GKS V+VIDAKTMSADPVAVVELP RVPYGFHAFFV+EEQL+EQAKL
Sbjct:  366 GTVQEKLENFSNELYEMRFNMKTGEASQKKLSASTVDFPRVNENYTGRKQRYVYGTTLDSIAKVTGIIKFDLHAEPDHGKEKLEVGGNVQGLYDLGPGKFGSEAVYIPRVPGIESEEDDGYLVLFVHDENAGKSFVHVIDAKTMSADPVAVVELPNRVPYGFHAFFVTEEQLQEQAKL 543          
BLAST of CK935329 vs. ExPASy Swiss-Prot
Match: CCD_CROSA (Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 7.397e-80
Identity = 147/176 (83.52%), Postives = 157/176 (89.20%), Query Frame = 1
Query:    4 NGAVKEKLENFSNELYEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIVKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPQRVPYGFHAFFVSEEQLEEQ 531
            NGAVKEKLENF NELYEMRFN+KTG ASQK+LS SAVDFPR+NE YT RKQRYVYGTILD+I KV GIIKFDLHAEP+  K KLEVGGNV+GIFDLGPGR+GSEAVFVPRE G  SEED GYLIFF HDE TGKS VNVIDAKTMSA+PVAVVELP RVPYGFHAFFV+EEQL+ Q
Sbjct:  367 NGAVKEKLENFKNELYEMRFNMKTGAASQKQLSVSAVDFPRINESYTTRKQRYVYGTILDNITKVKGIIKFDLHAEPEAGKKKLEVGGNVQGIFDLGPGRYGSEAVFVPRERGIKSEEDDGYLIFFVHDENTGKSEVNVIDAKTMSAEPVAVVELPNRVPYGFHAFFVNEEQLQWQ 542          
BLAST of CK935329 vs. ExPASy Swiss-Prot
Match: CCD1_ARATH (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2)

HSP 1 Score: 283.493 bits (724), Expect = 8.463e-76
Identity = 139/176 (78.98%), Postives = 156/176 (88.64%), Query Frame = 1
Query:    4 NGAVKEKLENFSNELYEMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIVKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPQRVPYGFHAFFVSEEQLEEQ 531
            +G VKEKLENF NELYEMRFN+KTG ASQK+LSASAVDFPR+NECYTG+KQRYVYGTILDSI KVTGIIKFDLHAE +  K  LEVGGN++GI+DLG GR+GSEA++VPRE   ++EED GYLIFF HDE TGKS V VIDAKTMSA+PVAVVELP RVPYGFHA FV+EEQL+EQ
Sbjct:  363 SGKVKEKLENFGNELYEMRFNMKTGSASQKKLSASAVDFPRINECYTGKKQRYVYGTILDSIAKVTGIIKFDLHAEAETGKRMLEVGGNIKGIYDLGEGRYGSEAIYVPRE---TAEEDDGYLIFFVHDENTGKSCVTVIDAKTMSAEPVAVVELPHRVPYGFHALFVTEEQLQEQ 535          
BLAST of CK935329 vs. ExPASy Swiss-Prot
Match: CCD4_ARATH (Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.800e-25
Identity = 62/160 (38.75%), Postives = 94/160 (58.75%), Query Frame = 1
Query:   52 EMRFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIVKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGT-SSEEDVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPQRVPYGFHAFFVSEEQLEE 528
            +++ +L TG+  +  +SA  +DF  +N  + GR  RYVY  I D + K++G++K D+     ++ T        R ++  G G +G E  FV R+PG   +EED GY++ + HDE TG+S   V+DAK+   + VA V LP+RVPYGFH  FV E  L +
Sbjct:  443 KVKIDLVTGIVRRHPISARNLDFAVINPAFLGRCSRYVYAAIGDPMPKISGVVKLDVSKGDRDDCTV------ARRMY--GSGCYGGEPFFVARDPGNPEAEEDDGYVVTYVHDEVTGESKFLVMDAKSPELEIVAAVRLPRRVPYGFHGLFVKESDLNK 594          
BLAST of CK935329 vs. ExPASy Swiss-Prot
Match: ZCD_CROSA (Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplast OS=Crocus sativus GN=ZCD PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.159e-22
Identity = 63/162 (38.89%), Postives = 89/162 (54.94%), Query Frame = 1
Query:   58 RFNLKTGLASQKRLSASAVDFPRVNECYTGRKQRYVYGTILDSIVKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIF---DLGPGRFGSEAVFVPREPGTSS-EEDVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPQRVPYGFHAFFVSEEQLEEQ 531
            R  LK+G  S+  LSA  +DF  ++  Y+GRK RY Y  + D + K+ G++K D            E+ G    +    + G G FG E  FVP     S  EED GY++ + HDE  G+SS  V+DA++   + +A V LP+RVPYGFH  FV+E +L  Q
Sbjct:  218 RIELKSGSVSRTLLSAENLDFGVIHRGYSGRKSRYAYLGVGDPMPKIRGVVKVDF-----------ELAGRGECVVARREFGVGCFGGEPFFVPASSKKSGGEEDDGYVVSYLHDEGKGESSFVVMDARSPELEILAEVVLPRRVPYGFHGLFVTEAELLSQ 368          
BLAST of CK935329 vs. ExPASy Swiss-Prot
Match: NCED6_ARATH (9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.125e-22
Identity = 66/164 (40.24%), Postives = 88/164 (53.66%), Query Frame = 1
Query:   43 ELYEMRFNLKTGLASQKRLSASA-VDFPRVNECYTGRKQRYVYGTILDSIVKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPQRVPYGFHAFFVSEEQLEEQ 531
            EL E+R N++T  +++K +     ++   +N  Y GRK ++VY  I D   K +GI K D+      E             F+ GP RFG E  FVP   G   EED GY++ F  DE+  +S   V+DA  M    VA V LP+RVPYGFH  FVSE QL+EQ
Sbjct:  430 ELSEIRLNMRTKESNRKVIVTGVNLEAGHINRSYVGRKSQFVYIAIADPWPKCSGIAKVDIQNGTVSE-------------FNYGPSRFGGEPCFVPEGEG---EEDKGYVMGFVRDEEKDESEFVVVDATDMKQ--VAAVRLPERVPYGFHGTFVSENQLKEQ 575          
BLAST of CK935329 vs. ExPASy Swiss-Prot
Match: NCED9_ARATH (9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.327e-20
Identity = 64/171 (37.43%), Postives = 92/171 (53.80%), Query Frame = 1
Query:   28 ENFSNELYEMRFNLKTGLASQKRLSASAVDFPR--VNECYTGRKQRYVYGTILDSIVKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPQRVPYGFHAFFVSEEQLEEQA 534
            E   + L E+R NLKTG ++++ + +  V+     VN    GRK RY Y  + +   KV+G  K DL              G +R  +  G G++G E +F+P   G   EED GY++ F HDE+  KS + +I+A  M  +  A V LP RVPYGFH  F+S+E L +QA
Sbjct:  503 ETLQSVLSEIRLNLKTGESTRRPVISEQVNLEAGMVNRNLLGRKTRYAYLALTEPWPKVSGFAKVDLST------------GEIRK-YIYGEGKYGGEPLFLPSGDG---EEDGGYIMVFVHDEEKVKSELQLINAVNMKLE--ATVTLPSRVPYGFHGTFISKEDLSKQA 655          
BLAST of CK935329 vs. ExPASy Swiss-Prot
Match: NCED3_ARATH (9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.123e-19
Identity = 62/176 (35.23%), Postives = 94/176 (53.41%), Query Frame = 1
Query:   19 EKLENFSNELYEMRFNLKTGLASQKRLSASA-----VDFPRVNECYTGRKQRYVYGTILDSIVKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSEEDVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPQRVPYGFHAFFVSEEQLEEQ 531
            E  EN  + L E+R NLKTG ++++ + ++      ++   VN    GRK ++ Y  + +   KV+G  K DL     E K  L            G  R+G E +F+P E G   EED GY++ F HDEKT KS + +++A ++  +  A V+LP RVPYGFH  F+  + L +Q
Sbjct:  440 ESDENLKSVLSEIRLNLKTGESTRRPIISNEDQQVNLEAGMVNRNMLGRKTKFAYLALAEPWPKVSGFAKVDLTT--GEVKKHL-----------YGDNRYGGEPLFLPGEGG---EEDEGYILCFVHDEKTWKSELQIVNAVSLEVE--ATVKLPSRVPYGFHGTFIGADDLAKQ 597          
BLAST of CK935329 vs. ExPASy Swiss-Prot
Match: NCED1_MAIZE (9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.123e-19
Identity = 62/178 (34.83%), Postives = 94/178 (52.81%), Query Frame = 1
Query:   19 EKLENFSNELYEMRFNLKTGLASQKRLSASA----VDFPRVNECYTGRKQRYVYGTILDSIVKVTGIIKFDLHAEPDEEKTKLEVGGNVRGIFDLGPGRFGSEAVFVPREPGTSSE--EDVGYLIFFSHDEKTGKSSVNVIDAKTMSADPVAVVELPQRVPYGFHAFFVSEEQLEEQA 534
            E  E   + L E+R + +TG ++++ +   +    ++   VN    GR+ RY Y  + +   KV+G  K DL      E TK          F+ G GRFG E  FVP +P  +    ED GY++ F HDE+ G S + V++A  M  +  A V+LP RVP+GFH  F++ ++LE QA
Sbjct:  441 ESDERLESVLTEIRLDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLSTG---ELTK----------FEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVHDERAGTSELLVVNAADMRLE--ATVQLPSRVPFGFHGTFITGQELEAQA 603          
The following BLAST results are available for this feature:
BLAST of CK935329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CCD1_PEA5.473e-8385.31Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD1_PHAVU2.542e-8082.02Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD_CROSA7.397e-8083.52Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Cr... [more]
CCD1_ARATH8.463e-7678.98Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD4_ARATH6.800e-2538.75Probable carotenoid cleavage dioxygenase 4, chloro... [more]
ZCD_CROSA3.159e-2238.89Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromo... [more]
NCED6_ARATH4.125e-2240.249-cis-epoxycarotenoid dioxygenase NCED6, chloropla... [more]
NCED9_ARATH1.327e-2037.439-cis-epoxycarotenoid dioxygenase NCED9, chloropla... [more]
NCED3_ARATH1.123e-1935.239-cis-epoxycarotenoid dioxygenase NCED3, chloropla... [more]
NCED1_MAIZE1.123e-1934.839-cis-epoxycarotenoid dioxygenase 1, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004563_A04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935329 ID=CK935329; Name=CK935329; organism=Citrus sinensis; type=EST; length=750bp
GGGAATGGGGCTGTCAAAGAAAAGCTAGAAAATTTCTCAAATGAACTGTA
TGAGATGAGATTCAACTTGAAAACTGGCCTAGCTTCACAAAAGAGATTAT
CGGCATCCGCTGTTGATTTTCCTAGGGTGAATGAGTGCTACACTGGCAGG
AAGCAAAGATATGTGTATGGAACAATACTAGATAGCATTGTAAAAGTCAC
AGGGATCATCAAATTTGATCTGCATGCTGAACCAGACGAAGAGAAAACAA
AGCTTGAAGTTGGAGGAAATGTGAGAGGCATCTTTGATCTGGGCCCTGGA
AGATTTGGTTCAGAGGCTGTTTTTGTTCCTAGAGAGCCTGGCACCTCTTC
TGAAGAAGATGTTGGTTACTTAATATTCTTCTCTCATGATGAGAAAACCG
GAAAGTCATCAGTGAACGTGATTGATGCAAAAACAATGTCAGCTGATCCT
GTTGCAGTTGTCGAATTACCACAAAGGGTTCCATACGGATTTCATGCCTT
CTTTGTGTCAGAGGAACAACTTGAAGAGCAAGCAAAATTGTGATCGTGGG
CAGAGACCTTGTGACAAGTAAAAGCAGAGCGATAAATAGAATAAATCTAA
AATCTCTTCCGCGAGCTGCGTTGGGTTTGTGGGTTATGTCATTATGTAGA
GCATTAGAACTCTGATGTAACAAGAAAAATATATTTGAGTTTTGTAATTA
ATTTTGCCACCAAGTTATCTCACCCCAAGAAGTTATTTTATCTGTTTTTT
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