CK935339

Overview
NameCK935339
Unique NameCK935339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1732 contig Csv1_Contig1732:197..923. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK935339 vs. ExPASy Swiss-Prot
Match: TMP14_ARATH (Thylakoid membrane phosphoprotein 14 kDa, chloroplastic OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.381e-19
Identity = 40/82 (48.78%), Postives = 58/82 (70.73%), Query Frame = 1 
Query:  244 QNVWDSSEDRLGLTGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLFKPDREELFQIINKSVSDILG 489
            Q  W+  +D+  +  L FAG+VALW S  +I+AID+LP++P  LEL+GI ++ WF Y+ L+FKPDRE LF+ +  +  DILG
Sbjct:   91 QEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILG 172
[Close]
BLAST of CK935339 vs. ExPASy Swiss-Prot
Match: Y4115_ARATH (Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana GN=At4g01150 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 32/79 (40.51%), Postives = 49/79 (62.03%), Query Frame = 1 
Query:  253 WDSSEDRLGLTGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTWFVYRYLLFKPDREELFQIINKSVSDILG 489
            WD  E++  +   G   IVA+W S  ++ AI+ +P++P  +EL+G+ ++ WFVYRYLLFK  R+EL + I      I G
Sbjct:   84 WDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAG 162
The following BLAST results are available for this feature:
BLAST of CK935339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TMP14_ARATH1.381e-1948.78Thylakoid membrane phosphoprotein 14 kDa, chloropl... [more]
Y4115_ARATH3.084e-1140.51Uncharacterized protein At4g01150, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004562_H08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935339 ID=CK935339; Name=CK935339; organism=Citrus sinensis; type=EST; length=727bp
GGGGAACACACACTCTTCTCTTCCTCTCCCCTCCACAACTACAAGGTACT
CATGGCTTCCATAACTGCATGCTTGCCTTCACCTTTGTTGGTTCAAGGAA
GACAAAAGCTATCCCTATTCATAACTCTTCCAAAGCTCCCACTTTCTCCT
CTTAATGAGAAGCAAAACTGTCTTGCAATTGTTGGGAAGGCCTCTGGGGA
AAGTTCCGAGTCTTCAACCTCTCTTACTGTTTTTAAGTCTGTTCAAAATG
TTTGGGATAGCTCCGAAGATCGGCTAGGTCTTACTGGATTGGGATTTGCA
GGTATAGTGGCTCTATGGGCGTCGGTAAATCTGATTACTGCTATTGACAA
GCTGCCAATTATCCCAAATGCACTAGAACTGATCGGGATATTGTTTTCTA
CATGGTTTGTATATCGTTATCTCTTGTTCAAACCTGATAGGGAAGAGCTA
TTCCAAATCATCAACAAGTCAGTGTCGGATATCTTGGGCCAGTGAATTGC
TTAGTAAATATAATAGTCTCGTGTAATTGAATATTTAATATGAATTTCAG
ATTTCTTTTTCCCCTCCTTTCGGTCTGGATCCTATATCTGTACTACTTTG
GCAATTAAAGCATGGCGTGCATGTGCCATTTGATAGTCCAAGCTTTCTGT
AACATCAAAGATAAAGCAATTCTATGGGCTCTTTTTCCACTTTGCTAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
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