CK935354

Overview
NameCK935354
Unique NameCK935354
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1802 contig Csv1_Contig1802:1..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.913e-40
Identity = 83/136 (61.03%), Postives = 100/136 (73.53%), Query Frame = 3
Query:  150 MKGGRSKADAVGTDSKL----KSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 545
            MKGG+SK ++   D KL    K    +A K   K +AAKDPNKPKRPPSAFFVFMEEFRK F + HP NK+V+ VGKAAG KWK+MSD EKAP+V K+EKRK +Y KNM+ YNK+ A+G    +E ES+KS SEVN
Sbjct:    1 MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGGDEEESEKSVSEVN 136          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.262e-40
Identity = 86/132 (65.15%), Postives = 101/132 (76.52%), Query Frame = 3
Query:  150 MKGGRSKADAVGTDSKLKSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 545
            MKGG+SKA +   D+KL  K   A  +  K +A KDPNKPKRPPSAFFVFME+FRK +KE HPNNKSVA VGKA G+KWK ++  EKAPF+ KAEKRK +Y KN+Q YNK+ A G  AAEE ESDKS+SEVN
Sbjct:    1 MKGGKSKAKS---DNKLAVKKQAADTKKTK-KAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG--AAEEEESDKSRSEVN 126          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.283e-36
Identity = 79/137 (57.66%), Postives = 102/137 (74.45%), Query Frame = 3
Query:  150 MKGGRSKADAVGTDSKL--KSKGARA---GKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAAEENESDKSKSEVN 545
            MKGG+SK ++   ++KL    KGA A   GK+ AK +  KDPNKPKRPPSAFFVFM +FR+Q+K+ HPNNKSVA VGKA GE+WKS+S++EKAP+V++A K+K +Y   +Q YNK+L       +E  SDKSKSEVN
Sbjct:    1 MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKLE---GKDDEEGSDKSKSEVN 134          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.420e-35
Identity = 82/142 (57.75%), Postives = 98/142 (69.01%), Query Frame = 3
Query:  150 MKGGRSKADAVGTDSKL--KSKGARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYNKQLADGVNAA--------EENESDKSKSEVN 545
            MKG +SK  A   D+KL  KSKGA    +  K +A KDPNKPKR PSAFFVFMEEFRK+FKE +P NKSVA VGKAAG++WKS+S+ +KAP+V KA K K +YNK +  YNK  +     A        +E ESDKSKSEVN
Sbjct:    1 MKGAKSKG-AAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEESDKSKSEVN 141          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.328e-33
Identity = 81/146 (55.48%), Postives = 98/146 (67.12%), Query Frame = 3
Query:  150 MKGGRSKADAVGTDSKL--KSKGA-RAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDYN-----------KQLADGVNAAEENESDKSKSEVN 545
            MKG +SK  A   D+KL  KSKGA +   +  K +A KDPNKPKR PSAFFVFM EFR++FK+ +P NKSVA VGKAAGE+WKS+S+ EKAP+V KA K K +YNK +  YN           K  A  V   +E ESDKSKSE+N
Sbjct:    1 MKGAKSKG-AAKADAKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNKGESAAAAAPKKAAAKEVEEEDEEESDKSKSEIN 145          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB3_BOVIN (High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.431e-19
Identity = 57/136 (41.91%), Postives = 76/136 (55.88%), Query Frame = 3
Query:  165 SKADAVGTDSKLKSKG-ARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY-NKQLADGVNAA---------EENESDKSKSE 539
            +KAD V  D ++K  G A+ GK+       KDPN PKRPPS FF+F  EFR + K A+P   S+  V K  GE W ++SD EK P++ KA K K  Y K++ DY +K   DG   A         EE+E D+ + E
Sbjct:   64 AKADKVRYDREMKDYGPAKGGKKK------KDPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADYKSKGKFDGAKGAAKVARKKVEEEDEEDEEEEE 192          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB3_MOUSE (High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 4.585e-18
Identity = 55/135 (40.74%), Postives = 74/135 (54.81%), Query Frame = 3
Query:  165 SKADAVGTDSKLKSKG-ARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY-NKQLADGVNA--------AEENESDKSKSE 539
            +KAD V  D ++K  G A+ GK+       KDPN PKRPPS FF+F  EFR + K  +P   S+  V K  GE W ++SD+EK P+V KA K K  Y K++ DY +K   DG            EE E ++ + E
Sbjct:   64 AKADKVRYDREMKDYGPAKGGKKK------KDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEEEEEEEEE 191          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB3_CHICK (High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.988e-18
Identity = 54/127 (42.52%), Postives = 70/127 (55.12%), Query Frame = 3
Query:  165 SKADAVGTDSKLKSKG-ARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY-NKQLADGVNAAEENESDKSKSE 539
            +KAD V  D ++K  G A+ GK+       KDPN PKRPPSAFF+F  EFR + K  +P   S+  V K  GE W ++SD EK P+  KA K K  Y K++ DY +K   DG   A    + K   E
Sbjct:   64 AKADKVRYDREMKDYGPAKGGKKK------KDPNAPKRPPSAFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADYKSKGKFDGAKGAATKAARKKVEE 183          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB1_CHICK (High mobility group protein B1 OS=Gallus gallus GN=HMGB1 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.742e-17
Identity = 53/127 (41.73%), Postives = 69/127 (54.33%), Query Frame = 3
Query:  165 SKADAVGTDSKLKSKG-ARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY-NKQLADGVNAAEENESDKSKSE 539
            +KAD V  D ++K  G A+ GK+       KDPN PKRPPS FF+F  EFR + K  +P   S+  V K  GE W ++SD EK P+  KA K K  Y K++ DY +K   DG   A    + K   E
Sbjct:   63 AKADKVRYDREMKDYGPAKGGKKK------KDPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADYKSKGKFDGAKGAATKAARKKVEE 182          
BLAST of CK935354 vs. ExPASy Swiss-Prot
Match: HMGB3_HUMAN (High mobility group protein B3 OS=Homo sapiens GN=HMGB3 PE=1 SV=4)

HSP 1 Score: 89.7373 bits (221), Expect = 2.275e-17
Identity = 53/136 (38.97%), Postives = 74/136 (54.41%), Query Frame = 3
Query:  165 SKADAVGTDSKLKSKG-ARAGKRTAKPEAAKDPNKPKRPPSAFFVFMEEFRKQFKEAHPNNKSVATVGKAAGEKWKSMSDDEKAPFVEKAEKRKSDYNKNMQDY-NKQLADGV---------NAAEENESDKSKSE 539
            +KAD V  D ++K  G A+ GK+       KDPN PKRPPS FF+F  EFR + K  +P   S+  V K  GE W +++D EK P++ KA K K  Y K++ DY +K   DG             EE+E ++ + E
Sbjct:   64 AKADKVRYDREMKDYGPAKGGKKK------KDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEEEDEEEEEEEE 192          
The following BLAST results are available for this feature:
BLAST of CK935354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
HMGL_SOYBN1.913e-4061.03HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_IPONI4.262e-4065.15HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
HMGL_VICFA1.283e-3657.66HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
MNB1B_MAIZE2.420e-3557.75DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_WHEAT1.328e-3355.48HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
HMGB3_BOVIN2.431e-1941.91High mobility group protein B3 OS=Bos taurus GN=HM... [more]
HMGB3_MOUSE4.585e-1840.74High mobility group protein B3 OS=Mus musculus GN=... [more]
HMGB3_CHICK5.988e-1842.52High mobility group protein B3 OS=Gallus gallus GN... [more]
HMGB1_CHICK1.742e-1741.73High mobility group protein B1 OS=Gallus gallus GN... [more]
HMGB3_HUMAN2.275e-1738.97High mobility group protein B3 OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_F07 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935354 ID=CK935354; Name=CK935354; organism=Citrus sinensis; type=EST; length=873bp
GCGGGGAAAACAAAGCATATCCTTTTGTCTTCNNNAAACCCTAACCTCAC
CAGGTAACTCGCTGAGTCTCTCCGGCGCTGACTCATCCGAGTCACCCCGA
TTTTCACCGATTCTCACCGGTTTGCGTCATTTTTAGTGCAGGATTCATCA
TGAAAGGAGGCAGATCGAAAGCTGACGCGGTAGGAACTGATAGCAAGCTG
AAGAGCAAAGGGGCGAGAGCCGGCAAGCGAACAGCGAAGCCCGAGGCTGC
GAAAGATCCAAACAAGCCGAAGAGGCCTCCTAGTGCTTTCTTCGTTTTCA
TGGAGGAGTTCAGGAAGCAGTTCAAAGAAGCTCATCCTAACAATAAATCT
GTTGCTACTGTTGGCAAAGCTGCTGGAGAAAAATGGAAGTCAATGTCAGA
TGATGAGAAAGCGCCATTTGTTGAAAAGGCTGAGAAAAGAAAGTCTGATT
ACAACAAGAACATGCAGGATTACAACAAGCAGTTGGCTGATGGAGTAAAT
GCTGCTGAGGAAAATGAATCTGACAAGTCCAAGTCTGAAGTGAATGATGA
GGATGATGAAGAAGGCAGTGGAGAGGAGGAAGATGATGATTAGAGAATGG
CAGCGAAGGATTCAAAAAGTTGAAGTTTTAGCAATCTAGTAGAATTGCTT
ATAACATGATAACCCTTAGCCTTTTAGATTAGATTAGGAAAGAAATCAAG
TGTTGTTCAGGATTTACTGAAGCACCATATCGATGGATACGTACCTAAAT
GTTCTCTTAAGTCTTTAATCATCTAGTTTCAACATTTATATGTATTATTT
ATTTGTCTATCTTGTTGCTTTTATCAGTTATTTTTCATGTTGGTGCACAT
TGGCCACTGCTTGTTGGTTGCTT
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