CK935361

Overview
NameCK935361
Unique NameCK935361
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1804 contig Csv1_Contig1804:1..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935361 vs. ExPASy Swiss-Prot
Match: GLU2B_MOUSE (Glucosidase 2 subunit beta OS=Mus musculus GN=Prkcsh PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.139e-27
Identity = 58/140 (41.43%), Postives = 83/140 (59.29%), Query Frame = 2
Query:  104 LLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPRFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEYKAQSYISTINDAG 523
            +L  L+ L+ LC+ V   + +   L  H     Y   +   C DG+ +   D++ND++CDC DG+DEPGT+ACP G F+C N G  P +I SSRVND +CDCCDG+DEY+S   C NTC   G  E ++   ++ +   G
Sbjct:    1 MLLLLLLLLPLCWAVEVKRPRGVSLSNHHF---YEESKPFTCLDGTATIPFDQVNDDYCDCKDGSDEPGTAACPNGSFHCTNTGYKPLYILSSRVNDGVCDCCDGTDEYNSGTVCENTCREKGRKEKESLQQLAEVTREG 137          
BLAST of CK935361 vs. ExPASy Swiss-Prot
Match: GLU2B_HUMAN (Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.223e-27
Identity = 57/140 (40.71%), Postives = 84/140 (60.00%), Query Frame = 2
Query:  104 LLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPRFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEYKAQSYISTINDAG 523
            +L  L+ L+ +C+ V   + +   L  H     Y   +   C DGS +   D++ND++CDC DG+DEPGT+ACP G F+C N G  P +I S+RVND +CDCCDG+DEY+S + C NTC   G  E ++   ++ +   G
Sbjct:    1 MLLPLLLLLPMCWAVEVKRPRGVSLTNHHF---YDESKPFTCLDGSATIPFDQVNDDYCDCKDGSDEPGTAACPNGSFHCTNTGYKPLYIPSNRVNDGVCDCCDGTDEYNSGVICENTCKEKGRKERESLQQMAEVTREG 137          
BLAST of CK935361 vs. ExPASy Swiss-Prot
Match: GLU2B_BOVIN (Glucosidase 2 subunit beta OS=Bos taurus GN=PRKCSH PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.414e-25
Identity = 56/136 (41.18%), Postives = 78/136 (57.35%), Query Frame = 2
Query:  116 LIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPRFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEYKAQSYISTINDAG 523
            L+ L+ +C+ V   + +   L  H     Y   +   C DGS S   D++ND++CDC DG+DEPGT+ACP G F+C N G    +I S  VND +CDCCDG+DEY+S I C NTC   G  E +    ++ +   G
Sbjct:    4 LLLLLPMCWAVEVRRPRGVSLTNHHF---YDESKPFTCLDGSASIPFDQVNDDYCDCKDGSDEPGTAACPNGSFHCTNTGYKALYISSRWVNDGVCDCCDGTDEYNSGIVCENTCKEKGRKERETLQQMAEVTREG 136          
BLAST of CK935361 vs. ExPASy Swiss-Prot
Match: GLU2B_SCHPO (Glucosidase 2 subunit beta OS=Schizosaccharomyces pombe GN=gtb1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.298e-24
Identity = 53/109 (48.62%), Postives = 71/109 (65.14%), Query Frame = 2
Query:  224 KCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPRFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEYKAQSYISTINDAGSIDARGAKI 550
            KC    K  + +++ND++CDC DG+DEPGTSAC  GKF+C N G    +I S+RV+D +CDCCDGSDE  S IKCPNTC        KA+ Y++T+ +   +   G KI
Sbjct:   47 KCLGSDKLISFNQVNDDYCDCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVCDCCDGSDE--SLIKCPNTCAQ------KAREYLATLEEHNRLVKNGLKI 147          
BLAST of CK935361 vs. ExPASy Swiss-Prot
Match: GLU2B_YEAST (Glucosidase 2 subunit beta OS=Saccharomyces cerevisiae GN=GTB1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.645e-11
Identity = 35/70 (50.00%), Postives = 41/70 (58.57%), Query Frame = 2
Query:  260 RLNDNFCDCIDGTDEPGTSACP----------AGK----FYCGNVGSTPRFIFSSRVNDRICDCCDGSDE 427
            ++ND  CDC DG+DEPG++AC            GK    FYC N G  PR+I  S V D ICDCCD SDE
Sbjct:   63 QINDGVCDCPDGSDEPGSAACVEDIFKSVAEGGGKVNKYFYCDNKGFIPRYIRKSEVADGICDCCDCSDE 132          
The following BLAST results are available for this feature:
BLAST of CK935361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GLU2B_MOUSE2.139e-2741.43Glucosidase 2 subunit beta OS=Mus musculus GN=Prkc... [more]
GLU2B_HUMAN6.223e-2740.71Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKC... [more]
GLU2B_BOVIN3.414e-2541.18Glucosidase 2 subunit beta OS=Bos taurus GN=PRKCSH... [more]
GLU2B_SCHPO1.298e-2448.62Glucosidase 2 subunit beta OS=Schizosaccharomyces ... [more]
GLU2B_YEAST1.645e-1150.00Glucosidase 2 subunit beta OS=Saccharomyces cerevi... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004562_E07 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935361 ID=CK935361; Name=CK935361; organism=Citrus sinensis; type=EST; length=688bp
GGGGGGGGCAATTGACTCTCGAGTCAAAGTGGAAATTGGAGTAAACATGG
CTGTGGCCTGAGGGCATGGAATCTGATGAAACCAAAGAGAGATGACGATG
GAGTTGTTAAGAAATTTGATACCTCTAATGTCCCTTTGTTTCCTTGTGGT
CTTTGTTCAGTGTAAATCTTCTCTCCTTGGCGTTCACCCACTTGATGAGA
AGTATTTCTCGAAAGAGGTTATCAAATGCAAAGATGGATCCAAATCTTTC
ACAAGAGACCGCCTTAACGACAATTTCTGCGATTGCATTGATGGAACCGA
TGAGCCCGGAACTTCTGCTTGTCCAGCTGGCAAATTTTACTGTGGGAATG
TTGGAAGTACACCGCGATTCATTTTCTCTTCTCGCGTCAATGATCGTATC
TGTGACTGTTGTGATGGAAGTGACGAGTATGATAGCAGTATCAAGTGTCC
CAACACTTGTGTCATGGGAGGGAATATTGAGTACAAGGCTCAGAGTTACA
TATCTACAATCAATGATGCTGGCTCTATTGATGCAAGAGGAGCCAAAATT
CCAGTCAACAAGGAGGACTTGATTGAGAGGCTTAAAGATGTGAAGATGGT
AGTAGTTCTGCAGTTGTTCGTTATTATCTTTTTGGTGGTTTTGTGGATAA
CGCATCACCGTGTCAGATCTAAAAGAAGACATTCCCGT
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