CK935365

Overview
NameCK935365
Unique NameCK935365
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1806 contig Csv1_Contig1806:1..798. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK935365 vs. ExPASy Swiss-Prot
Match: YAN9_SCHPO (Putative amino acid permease C3H1.09c OS=Schizosaccharomyces pombe GN=SPAC3H1.09c PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.908e-12
Identity = 48/150 (32.00%), Postives = 79/150 (52.67%), Query Frame = 3 
Query:  333 AIVGAGVLGLPYTFKKTGWIMGSLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGFTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTRMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADI 782
            + VG GVL LP  FK  G +  S  L  V  L++ C +LL+ TR K+          SFGD+G T+ G   R A+ A IV++Q GF  +Y+ F+A+TL   +   +T+          A++I+  F   + L+ +  ++ L+  ++ AD+
Sbjct:  287 SFVGTGVLFLPKAFKLGGLVFSSATLLIVGVLSHICFLLLIQTRMKVP--------GSFGDIGGTLYGPHMRFAILASIVVSQIGFSSAYISFVASTLQACVKVISTTHREYHL----AVFIFIQFLVFVPLSLVRKISKLSATALIADV 424
The following BLAST results are available for this feature:
BLAST of CK935365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YAN9_SCHPO1.908e-1232.00Putative amino acid permease C3H1.09c OS=Schizosac... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004562_E11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935365 ID=CK935365; Name=CK935365; organism=Citrus sinensis; type=EST; length=797bp
GGGGATCTGTAATATGCCCATTTTCCTTCTTCATCTCTTATCTCACGAAA
AGGTCATTTTTTCTCCTACAACTCACCTGAAAAGTGCTTAATATACCCAA
CCCATTTGATCACCTGAATCATTTCATTAGCCCCATCTAATTCTTCTGAT
ACGTGATTTCAATTCTCAAACACAACAAACACAATAAGGAAGAAAACATG
GGATTTGATGAAGAAGCGGGCTCATCTTCATACACACTGCCAGTGCCACC
TTACCCAAGAGAAGACACCCCACTTCTAACCAAATCGAAGACTCTCTCTA
CACGATCCAAGACCTTTGCTAATGTCTTCATAGCCATAGTTGGTGCGGGG
GTATTAGGCCTGCCTTACACCTTTAAGAAAACTGGATGGATCATGGGCTC
ACTTATGCTCTTCTCTGTTGCAGCCTTGACTTACTACTGCATGATGCTTT
TGGTCCACACTCGTCGCAAGCTTGAAACCATTCATGGCTTCTCAAAAATC
AATTCTTTTGGCGATCTTGGCTTTACCGTTTGTGGTTCAGTTGGTCGTGT
AGCTGTCGATGCTATGATAGTCCTTGCGCAAGCGGGTTTCTGTGTTAGTT
ATCTAATCTTCATTGCCAATACTTTAACTCGTATGATTAATAATAGCACT
ACTTCACAAACTATTCTTGGCTTTTTGTCGCCTAAGGCTCTGTATATTTG
GGGGTGTTTCCCTTTCCAACTAGGGTTAAATTCAATTCCAACTTTGACTC
ATTTGGCCCCTTTGAGTATTTTTGCTGATATTGTTGATCTTGGAGCT
back to top