CK935375

Overview
NameCK935375
Unique NameCK935375
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK935375 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.113e-23
Identity = 58/141 (41.13%), Postives = 84/141 (59.57%), Query Frame = 3 
Query:  132 MLGVFSSAIVSPPEELVA--AGSRTPSPKTTSKALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGTNLVRFLFI 548
            ML VF  +I  PP EL    AG +    KT  + + + F      +    + +   +A++H NE+PL+ RS  V D++FC+F GALDN   LR+ YGL++ A E ++++EAYK LRDRAPYPP+ V+  L G    +F FI
Sbjct:    1 MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREE-IAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEG----KFAFI 136
The following BLAST results are available for this feature:
BLAST of CK935375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC3.113e-2341.13Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004562_E04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935375 ID=CK935375; Name=CK935375; organism=Citrus sinensis; type=EST; length=682bp
GGGAATCCCAAGTCCCCCCTTTGAACTTTCCAGTTAAAGCCAAAGAGTTC
CGAACGGATCAAAGTTTTCTTGTAGGAGAGAGAAATTTCTAGGGCGAGAA
AGCGAGAGAAAAGGAAATTTGGTAGCTTAAAATGTTGGGAGTGTTCAGCA
GCGCGATCGTTTCACCTCCAGAGGAGCTGGTGGCGGCCGGAAGCCGGACT
CCGTCGCCGAAGACCACATCGAAGGCACTGGTCGACCGTTTCCTCCAGAC
CAACTCGTCTGCTGTGTCCGTACAGGTCGGGGACAACGTCACCCTCGCGT
ACACTCATCAGAACGAGTCTCCTTTACGGCAAAGATCATTTGCTGTGAAA
GATGAGATCTTTTGCTTGTTTGAGGGAGCACTTGATAACTTGGGAAGCCT
GAGGCAGCAATATGGACTAGCTAAGTCGGCAAATGAAGTGATCTTGGTGA
TTGAGGCATACAAGGCTCTGCGTGATCGGGCCCCTTACCCACCGAACCAT
GTCGTTGGCCACCTTAGTGGGACCAATTTGGTAAGGTTCCTCTTTATTGG
GGAATCACTGCTGATGGACATGTTGCCTTTGCTGATGATGCTGACTTGCT
CAAAGGTGCTTGCGGCAAGTCACTTGCTTCTTTCCCTCAAGGTTGTTTCT
TCTCAACAGCAGTTGGAGGACTGAGAAGCTTT
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