CK935376

Overview
NameCK935376
Unique NameCK935376
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1809 contig Csv1_Contig1809:1..798. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK935376 vs. ExPASy Swiss-Prot
Match: Y1259_ARATH (DCC family protein At1g52590, chloroplastic OS=Arabidopsis thaliana GN=At1g52590 PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.181e-54
Identity = 113/174 (64.94%), Postives = 128/174 (73.56%), Query Frame = 2 
Query:   35 MALLVPGGGCARLAISHPAQVSRRTAVVATLSPPKRDKVDYWVDATSSFFEPDSRPIMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDRSYIKSDAVLKIMEYIDXXXXXXXXXXXXXXXXXRDFAYDNIANNRYNIFGRSDSCEL 556
            MA+L+P     RL I+  AQV  R +  A     +RD VD WV  TSSFFE D RPIML+DGVCNLCNGGVKFVRD+D+NR IR+EALQSE+GKKLL RSGRAPDDISSVVLVE DRSYIKS+AVLKIM+YID                 RDF Y+N+ANNRY +FGRSDSCEL
Sbjct:    1 MAILIPAS-FGRLTITSRAQVRVRVSASANQRTIRRDSVD-WVKETSSFFEEDKRPIMLFDGVCNLCNGGVKFVRDHDRNRSIRFEALQSEAGKKLLLRSGRAPDDISSVVLVENDRSYIKSEAVLKIMKYIDLPFPQLAFFLQFAPLFVRDFLYENVANNRYAMFGRSDSCEL 172
[Close]
BLAST of CK935376 vs. ExPASy Swiss-Prot
Match: YUXK_BACSU (Uncharacterized protein yuxK OS=Bacillus subtilis GN=yuxK PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.668e-16
Identity = 44/118 (37.29%), Postives = 64/118 (54.24%), Query Frame = 2 
Query:  203 IMLYDGVCNLCNGGVKFVRDNDKNRRIRYEALQSESGKKLLRRSGRAPDDISSVVLVEKDRSYIKSDAVLKIMEYIDXXXXXXXXXXXXXXXXXRDFAYDNIANNRYNIFGRSDSCEL 556
            ++L+DGVCNLCNG V+F+   D +  I + +LQSE+G+ LL++SG   D   S V +E  + Y KS A +K+  ++                  RD  Y  IA NRY  FG+ + C L
Sbjct:   10 VLLFDGVCNLCNGAVQFIIKRDPDGLISFTSLQSETGQSLLKKSGLPTDRFDSFVFIEDGQVYTKSTAAIKVFRHL-RGPWRLFVLFFAVPKPVRDMVYSFIAKNRYKWFGKKNECML 126
The following BLAST results are available for this feature:
BLAST of CK935376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y1259_ARATH1.181e-5464.94DCC family protein At1g52590, chloroplastic OS=Ara... [more]
YUXK_BACSU1.668e-1637.29Uncharacterized protein yuxK OS=Bacillus subtilis ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004562_E05 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935376 ID=CK935376; Name=CK935376; organism=Citrus sinensis; type=EST; length=798bp
GGGGGAGCGAAGCTAATAACCGTCTTTCATCATCATGGCGCTTCTTGTTC
CTGGTGGTGGGTGCGCACGTTTAGCCATCTCCCACCCAGCGCAAGTTAGC
CGGAGAACAGCCGTTGTTGCTACGCTGTCACCTCCCAAACGCGATAAAGT
TGACTACTGGGTCGATGCAACTTCGAGCTTCTTTGAACCAGACTCCAGAC
CCATCATGTTATATGATGGTGTTTGCAATTTGTGTAATGGAGGAGTGAAG
TTTGTACGGGATAACGACAAAAATAGGAGAATCAGGTACGAAGCTCTCCA
GAGTGAATCAGGCAAGAAACTGCTGAGGAGGTCAGGAAGAGCTCCTGATG
ATATTTCAAGTGTTGTGCTTGTTGAAAAGGATAGATCATATATCAAGTCA
GATGCTGTTCTTAAGATAATGGAATACATAGACCTACCTTTCCCTCAGCT
AGCATTTTTTCTACAGTTTGTTCCTCAGTTTGTAAGAGATTTTGCATATG
ACAACATAGCAAACAATCGATACAACATTTTTGGCCGCTCAGATTCATGT
GAGTTATATGATAATTAAGGATGTGCAATCGTTGCGGCTAATGAATGTAT
GTATATATTTGAAACTCCAGAAATGAGGGATCATAATGTGGTCCATTGTT
TCTTGCTCTGTGGAAATAGAATATACTGTGAACATGTTTATCAATTGACA
TTTGACAACTCTTAATGTAAATTGGTCATCTTGGCCATATATATGCTTAC
AATTCTGACCTTATTGTTACNNANAAAAAAAAAAAAAAAAAAAAAAAA
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