CK935378

Overview
NameCK935378
Unique NameCK935378
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935378_ssr821 microsatellite CK935378_ssr821:821..840. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9272 contig Csv1_Contig9272:1..842. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935378 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.236e-21
Identity = 75/214 (35.05%), Postives = 89/214 (41.59%), Query Frame = 2
Query:   65 PSSNPNPNSKDMEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPT-----PNEILGTLARXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLALN-SYRNAGACLPVATARPVLFFDVFSSGGTVATHRDARRVGFYPGGTQXXXXXXXXXXXYDPRSS---------ERRLIARDLDLNLPPPPEVA 661
            P++    ++   EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDT                GAKAKTNFPT       ++    AR                             L L+      G+C  +  +RPV F D+    G V   +       +                 D  SS         E+R    DLDLNLPPP E A
Sbjct:   10 PATTNQTHNNAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFPTFLELSDQKVPTGFARSPSQSSTLDCASPPTLVVPSATAGNVPPQLELSLGGGGGGSCYQIPMSRPVYFLDLMGI-GNVGRGQPPPVTSAFRSPVVHVATKMACGAQSDSDSSSVVDFEGGMEKRSQLLDLDLNLPPPSEQA 222          
BLAST of CK935378 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.461e-18
Identity = 42/64 (65.62%), Postives = 45/64 (70.31%), Query Frame = 2
Query:  101 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTPNE 292
            E+ +RGVRKRPWGRYAAEIRDPGKKTRVWLGTFDT                G+KAKTNFP P E
Sbjct:   30 EVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPLPGE 93          
BLAST of CK935378 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.461e-18
Identity = 42/64 (65.62%), Postives = 45/64 (70.31%), Query Frame = 2
Query:  101 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTPNE 292
            E+ YRGVRKRPWGRYAAEIRDPGKK+RVWLGTFDT                G KAKTNFP+P E
Sbjct:   24 EVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPSPTE 87          
BLAST of CK935378 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.744e-18
Identity = 42/64 (65.62%), Postives = 45/64 (70.31%), Query Frame = 2
Query:  101 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTPNE 292
            E+ YRGVRKRPWGRYAAEIRDPGKK+RVWLGTFDT                G KAKTNFP P+E
Sbjct:   24 EVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPLPSE 87          
BLAST of CK935378 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.836e-17
Identity = 42/73 (57.53%), Postives = 47/73 (64.38%), Query Frame = 2
Query:   68 SSNPNPNSKDMEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTP 286
            +  PN +    EIR+RGVRKRPWGR+AAEIRDP KKTRVWLGTFD+                G KAKTNFP P
Sbjct:   14 TGEPNGSGGSKEIRFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARALRGPKAKTNFPLP 86          
BLAST of CK935378 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.249e-17
Identity = 41/62 (66.13%), Postives = 43/62 (69.35%), Query Frame = 2
Query:  101 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTP 286
            E+ YRGVRKRPWGRYAAEIRDP KKTRVWLGTFDT                G KAKTNFP+P
Sbjct:    9 EVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFPSP 70          
BLAST of CK935378 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.094e-16
Identity = 41/62 (66.13%), Postives = 43/62 (69.35%), Query Frame = 2
Query:  104 IRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTPN 289
            +RYRGVRKRPWGRYAAEIRDP KK+RVWLGTFDT                GAKAKTNFP  N
Sbjct:   18 VRYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFPCYN 79          
BLAST of CK935378 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.121e-16
Identity = 41/59 (69.49%), Postives = 41/59 (69.49%), Query Frame = 2
Query:  101 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNF 277
            EIRYRGVRKRPWGRYAAEIRDP KKTRVWLGTFDT                G KAKTNF
Sbjct:   28 EIRYRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNF 86          
BLAST of CK935378 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.721e-15
Identity = 39/65 (60.00%), Postives = 42/65 (64.62%), Query Frame = 2
Query:   86 NSKDMEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 280
            N    EIR+RGVRKRPWGR+AAEIRDP KK RVWLGTFD+                G KAKTNFP
Sbjct:   20 NGSVKEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFP 84          
BLAST of CK935378 vs. ExPASy Swiss-Prot
Match: ERF77_ARATH (Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.246e-14
Identity = 39/78 (50.00%), Postives = 47/78 (60.26%), Query Frame = 2
Query:   47 RDKLDKPSSNPNPNSKDMEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 280
            R  + K  +  +   K  E+RYRGVR+RPWGRYAAEIRDP KK RVWLG+F+T                G+KA TNFP
Sbjct:   32 RKNVTKALAVNDGGEKSKEVRYRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNFP 109          
The following BLAST results are available for this feature:
BLAST of CK935378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
ERF78_ARATH3.236e-2135.05Ethylene-responsive transcription factor 4 OS=Arab... [more]
ERF80_ARATH7.461e-1865.63Ethylene-responsive transcription factor 9 OS=Arab... [more]
ERF4_TOBAC7.461e-1865.63Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF4_NICSY9.744e-1865.63Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF3_TOBAC4.836e-1757.53Ethylene-responsive transcription factor 3 OS=Nico... [more]
ERF81_ARATH8.249e-1766.13Ethylene-responsive transcription factor 12 OS=Ara... [more]
ERF76_ARATH4.094e-1666.13Ethylene-responsive transcription factor 11 OS=Ara... [more]
ERF79_ARATH9.121e-1669.49Ethylene-responsive transcription factor 8 OS=Arab... [more]
ERF82_ARATH7.721e-1560.00Ethylene-responsive transcription factor 3 OS=Arab... [more]
ERF77_ARATH2.246e-1450.00Ethylene-responsive transcription factor 10 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_C12 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935378 ID=CK935378; Name=CK935378; organism=Citrus sinensis; type=EST; length=848bp
GGGAAGAGCTAACAAACAACTTGCTCCTCTGTTCAAAATGGCTCCGAGAG
ATAAGCTCGACAAACCATCCTCTAACCCGAATCCGAATTCGAAGGATATG
GAGATCCGATACAGAGGAGTGAGGAAGCGGCCGTGGGGGCGTTACGCCGC
CGAGATCCGGGACCCGGGGAAGAAAACCCGCGTCTGGCTCGGCACCTTCG
ACACCGCCGAGGAAGCAGCACGTGCCTACGACGCAGCAGCGCGTGAGTTC
CGCGGCGCCAAAGCCAAGACAAACTTCCCAACGCCAAACGAAATTCTTGG
CACCCTCGCCCGCAGCCCCAGCCAGAGCAGCACCGTGGAGTCATCCTCTC
CTCCTCCGCCGACGCTGCTGCCACAGCCACAGCCGCTGCCACAGCTAAAC
CTAGCTCTCAACAGCTACCGTAATGCCGGCGCGTGCCTCCCAGTCGCCAC
GGCGCGTCCGGTCCTTTTCTTCGACGTTTTCTCCTCCGGTGGTACTGTTG
CGACTCACCGTGATGCACGCCGTGTTGGTTTTTATCCCGGCGGGACCCAG
AGCGACTCCGATTCGTCATCTGTCGTCGTTGATTACGATCCTCGTTCGTC
TGAGAGAAGATTGATTGCTCGTGATCTTGATCTTAATCTCCCTCCTCCAC
CTGAAGTGGCTTGAGTATTTGGACTGAAGCTAATGCTGACGTGTACGGCG
ATGGTGATGTGTATATAGTGACCCTAGCAAGATCCTTTGGTCGATCTTCG
TATTTTTGTTTTTGCAACTGGAAAATCTAGGACGGTTACTCCACGTTGTT
TTTAACTGCTGCCGTTAGAAATATATATATATATATATATGTTTAATG
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