CK935379

Overview
NameCK935379
Unique NameCK935379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7804 contig Csv1_Contig7804:139..916. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935379 vs. ExPASy Swiss-Prot
Match: DCE_PETHY (Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1)

HSP 1 Score: 424.476 bits (1090), Expect = 3.239e-118
Identity = 211/227 (92.95%), Postives = 216/227 (95.15%), Query Frame = 2
Query:   98 MVLSKTFSESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDL 778
            MVLSKT S+SD SIHSTFASRYVR SLPRF MP+NSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMM +INKNYVDMDEYPVTTELQNRCVN+IA LFNAPLED ETAVGVGTVGSSEAIMLAGLAFKRKWQNK KA+GKP DKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDP KAVEMVDENTICVAAILGSTLNGEFEDVK LNDL
Sbjct:    1 MVLSKTVSQSDVSIHSTFASRYVRTSLPRFKMPDNSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMDSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEDGETAVGVGTVGSSEAIMLAGLAFKRKWQNKMKAQGKPCDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVKRLNDL 227          
BLAST of CK935379 vs. ExPASy Swiss-Prot
Match: DCE1_ARATH (Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2)

HSP 1 Score: 424.091 bits (1089), Expect = 4.230e-118
Identity = 209/227 (92.07%), Postives = 218/227 (96.04%), Query Frame = 2
Query:   98 MVLSKTFSESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDL 778
            MVLS   SESD S+HSTFASRYVR SLPRF MPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKL+M++INKNYVDMDEYPVTTELQNRCVN+IA LFNAPLE++ETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKP DKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDP +AV+MVDENTICVAAILGSTLNGEFEDVKLLNDL
Sbjct:    1 MVLSHAVSESDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDL 227          
BLAST of CK935379 vs. ExPASy Swiss-Prot
Match: DCE2_ARATH (Glutamate decarboxylase 2 OS=Arabidopsis thaliana GN=GAD2 PE=1 SV=1)

HSP 1 Score: 400.979 bits (1029), Expect = 3.835e-111
Identity = 199/227 (87.67%), Postives = 213/227 (93.83%), Query Frame = 2
Query:   98 MVLSKTFSESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDL 778
            MVL+KT + +DES+ + F SRYVR +LP++ + ENSIPK+AAYQII DELMLDGNPRLNLASFVTTWMEPECDKL+M +INKNYVDMDEYPVTTELQNRCVNIIARLFNAPLE+SETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKP+DKPNIVTGANVQVCWEKFARYFEVELKEV LSEGYYVMDP KA EMVDENTICVAAILGSTLNGEFEDVK LNDL
Sbjct:    1 MVLTKT-ATNDESVCTMFGSRYVRTTLPKYEIGENSIPKDAAYQIIKDELMLDGNPRLNLASFVTTWMEPECDKLIMDSINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEESETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVNLSEGYYVMDPDKAAEMVDENTICVAAILGSTLNGEFEDVKRLNDL 226          
BLAST of CK935379 vs. ExPASy Swiss-Prot
Match: DCE_SOLLC (Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 396.741 bits (1018), Expect = 7.232e-110
Identity = 193/228 (84.65%), Postives = 213/228 (93.42%), Query Frame = 2
Query:   98 MVLSKT-FSESDESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDL 778
            MVL+ T   +S+ES+H TFASRYV+  LP+F MP+ S+PKEAAYQI+NDELMLDGNPRLNLASFV+TWMEPECDKL+M++INKNYVDMDEYPVTTELQNRCVN++A LF+AP+ D ETAVGVGTVGSSEAIMLAGLAFKRKWQ+KRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKL EGYYVMDP KAVE+VDENTICVAAILGSTL GEFEDVKLLN+L
Sbjct:    1 MVLTTTSIRDSEESLHCTFASRYVQEPLPKFKMPKKSMPKEAAYQIVNDELMLDGNPRLNLASFVSTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMLAHLFHAPVGDDETAVGVGTVGSSEAIMLAGLAFKRKWQSKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLKEGYYVMDPAKAVEIVDENTICVAAILGSTLTGEFEDVKLLNEL 228          
BLAST of CK935379 vs. ExPASy Swiss-Prot
Match: GADA_DICDI (Glutamate decarboxylase A OS=Dictyostelium discoideum GN=gadA PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.435e-49
Identity = 100/215 (46.51%), Postives = 143/215 (66.51%), Query Frame = 2
Query:  131 ESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLND 775
            +  + ++AS      + ++++ E S   E    +I DEL+LDGN + NLA+F  T ++ E   LM   I+KN +D DEYP T E+++RCV+I+A L+N+P E SET +G  T GSSEA ML G+A K +W+  RK +GKPFDKPNIVTG  VQ+CW KFA YF++EL+EV +    Y+M P +A++  DENTI V   LG T   ++EDVK +++
Sbjct:   12 KGFYDSYASPPATKEISKYSLKEESNKPEVIRDLIIDELLLDGNAKQNLATFCQTDLDKEIHVLMDKCIDKNMIDKDEYPQTAEIESRCVHILADLWNSP-ESSET-IGCSTTGSSEAAMLGGMALKWRWRENRKKQGKPFDKPNIVTGP-VQICWHKFALYFDIELREVPMEHDRYIMTPEEAIKRCDENTIGVIPTLGVTFTLQYEDVKGISE 223          
BLAST of CK935379 vs. ExPASy Swiss-Prot
Match: DCEB_SHIFL (Glutamate decarboxylase beta OS=Shigella flexneri GN=gadB PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.174e-49
Identity = 97/215 (45.12%), Postives = 136/215 (63.26%), Query Frame = 2
Query:  131 ESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLND 775
            E + S F ++ +         P + +  + A+QIINDEL LDGN R NLA+F  TW +    KLM  +INKN++D +EYP +  +  RCVN++A L++AP   +  AVG  T+GSSEA ML G+A K +W+ + +A GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E  + L+D
Sbjct:   12 ELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHD 225          
BLAST of CK935379 vs. ExPASy Swiss-Prot
Match: DCEB_ECOLI (Glutamate decarboxylase beta OS=Escherichia coli (strain K12) GN=gadB PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.174e-49
Identity = 97/215 (45.12%), Postives = 136/215 (63.26%), Query Frame = 2
Query:  131 ESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLND 775
            E + S F ++ +         P + +  + A+QIINDEL LDGN R NLA+F  TW +    KLM  +INKN++D +EYP +  +  RCVN++A L++AP   +  AVG  T+GSSEA ML G+A K +W+ + +A GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E  + L+D
Sbjct:   12 ELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHD 225          
BLAST of CK935379 vs. ExPASy Swiss-Prot
Match: DCEB_ECO57 (Glutamate decarboxylase beta OS=Escherichia coli O157:H7 GN=gadB PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.174e-49
Identity = 97/215 (45.12%), Postives = 136/215 (63.26%), Query Frame = 2
Query:  131 ESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLND 775
            E + S F ++ +         P + +  + A+QIINDEL LDGN R NLA+F  TW +    KLM  +INKN++D +EYP +  +  RCVN++A L++AP   +  AVG  T+GSSEA ML G+A K +W+ + +A GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E  + L+D
Sbjct:   12 ELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHD 225          
BLAST of CK935379 vs. ExPASy Swiss-Prot
Match: DCEA_SHIFL (Glutamate decarboxylase alpha OS=Shigella flexneri GN=gadA PE=2 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 4.174e-49
Identity = 97/215 (45.12%), Postives = 136/215 (63.26%), Query Frame = 2
Query:  131 ESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLND 775
            E + S F ++ +         P + +  + A+QIINDEL LDGN R NLA+F  TW +    KLM  +INKN++D +EYP +  +  RCVN++A L++AP   +  AVG  T+GSSEA ML G+A K +W+ + +A GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E  + L+D
Sbjct:   12 ELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHD 225          
BLAST of CK935379 vs. ExPASy Swiss-Prot
Match: DCEA_ECOLI (Glutamate decarboxylase alpha OS=Escherichia coli (strain K12) GN=gadA PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.174e-49
Identity = 97/215 (45.12%), Postives = 136/215 (63.26%), Query Frame = 2
Query:  131 ESIHSTFASRYVRNSLPRFTMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIARLFNAPLEDSETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVEMVDENTICVAAILGSTLNGEFEDVKLLND 775
            E + S F ++ +         P + +  + A+QIINDEL LDGN R NLA+F  TW +    KLM  +INKN++D +EYP +  +  RCVN++A L++AP   +  AVG  T+GSSEA ML G+A K +W+ + +A GKP DKPN+V G  VQ+CW KFARY++VEL+E+ +  G   MDP + +E  DENTI V    G T  G +E  + L+D
Sbjct:   12 ELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHD 225          
The following BLAST results are available for this feature:
BLAST of CK935379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCE_PETHY3.239e-11892.95Glutamate decarboxylase OS=Petunia hybrida GN=GAD ... [more]
DCE1_ARATH4.230e-11892.07Glutamate decarboxylase 1 OS=Arabidopsis thaliana ... [more]
DCE2_ARATH3.835e-11187.67Glutamate decarboxylase 2 OS=Arabidopsis thaliana ... [more]
DCE_SOLLC7.232e-11084.65Glutamate decarboxylase OS=Solanum lycopersicum PE... [more]
GADA_DICDI1.435e-4946.51Glutamate decarboxylase A OS=Dictyostelium discoid... [more]
DCEB_SHIFL4.174e-4945.12Glutamate decarboxylase beta OS=Shigella flexneri ... [more]
DCEB_ECOLI4.174e-4945.12Glutamate decarboxylase beta OS=Escherichia coli (... [more]
DCEB_ECO574.174e-4945.12Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCEA_SHIFL4.174e-4945.12Glutamate decarboxylase alpha OS=Shigella flexneri... [more]
DCEA_ECOLI4.174e-4945.12Glutamate decarboxylase alpha OS=Escherichia coli ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_D01 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935379 ID=CK935379; Name=CK935379; organism=Citrus sinensis; type=EST; length=778bp
GGGGGAAGCTCATACTTCATTAGCTCTCTATACTCTCTCTGACACCAAAA
GAAAAAAACAATCATTATTAAATTTTGTTTGTTTTAATATTTCAATCATG
GTTCTTTCAAAGACATTTTCCGAATCCGATGAGTCAATTCACTCCACCTT
TGCCTCTCGCTACGTCCGAAACTCTCTTCCTCGGTTCACGATGCCGGAGA
ACTCGATACCGAAGGAGGCGGCGTACCAGATCATAAACGACGAGCTGATG
CTCGACGGGAATCCAAGATTGAACTTGGCTTCCTTCGTCACAACGTGGAT
GGAGCCTGAATGTGACAAGCTTATGATGGCTGCCATTAACAAGAACTACG
TTGACATGGATGAGTATCCTGTCACCACCGAGCTTCAGAATCGATGTGTG
AACATCATTGCCCGACTGTTCAATGCTCCACTGGAGGACTCCGAGACGGC
TGTCGGAGTTGGAACCGTAGGATCATCGGAAGCCATAATGTTGGCCGGCC
TTGCATTCAAAAGAAAGTGGCAGAACAAGCGCAAGGCTGAAGGAAAGCCC
TTTGACAAACCCAACATTGTCACTGGAGCGAACGTTCAGGTCTGCTGGGA
GAAATTTGCAAGGTATTTTGAGGTAGAGTTGAAGGAAGTGAAGCTGTCGG
AAGGCTACTATGTGATGGACCCAGTCAAAGCTGTAGAAATGGTGGATGAA
AACACTATCTGTGTTGCTGCTATTCTGGGTTCTACTCTTAATGGAGAATT
TGAAGATGTCAAGCTCTTGAACGACCTT
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