CK935385

Overview
NameCK935385
Unique NameCK935385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935385_ssr26 microsatellite CK935385_ssr26:26..35. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1476 contig Csv1_Contig1476:4..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935385 vs. ExPASy Swiss-Prot
Match: E13L3_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 3 OS=Arabidopsis thaliana GN=At5g08000 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.455e-25
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 1
Query:  202 HSTANWCVCKDGVGDPVLQKALXXXXXXXXXXNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 462
            H++A+WCVCK G+ D VLQK L          NP H  G C+NP+ V+AHC+YAVNS+FQ+KGQA  SC+F+G+AT+ TTDPS  GC
Sbjct:   16 HTSASWCVCKTGLSDSVLQKTLDYACGNGADCNPTHPKGSCFNPDNVRAHCNYAVNSFFQKKGQASESCNFTGTATLTTTDPSYTGC 102          
BLAST of CK935385 vs. ExPASy Swiss-Prot
Match: E13L2_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 2 OS=Arabidopsis thaliana GN=At5g61130 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.471e-22
Identity = 44/87 (50.57%), Postives = 58/87 (66.67%), Query Frame = 1
Query:  202 HSTANWCVCKDGVGDPVLQKALXXXXXXXXXXNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 462
            HS+A+WCVCK G+ D VLQ  L          NP      C+NP+ V++HC+YAVNS+FQ+KGQ+ GSC+F G+AT   +DPS  GC
Sbjct:   16 HSSASWCVCKTGLSDTVLQATLDYACGNGADCNPTKPKQSCFNPDNVRSHCNYAVNSFFQKKGQSPGSCNFDGTATPTNSDPSYTGC 102          
BLAST of CK935385 vs. ExPASy Swiss-Prot
Match: E13L4_ARATH (Glucan endo-1,3-beta-glucosidase-like protein At1g69295 OS=Arabidopsis thaliana GN=At1g69295 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.750e-16
Identity = 40/85 (47.06%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  202 HSTANWCVCKDGVGDPVLQKALXXXXXXXXXXNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTA 456
            +S A +C+CK+G  + VLQKA+            I   G CY PNTVK HC  AVNSY+Q+K  +  +CDF+G+A+ +TT PSTA
Sbjct:   16 YSNAAYCLCKEG-NEQVLQKAIDYACGNGADCTQIQPTGACYQPNTVKNHCDVAVNSYYQKKASSGATCDFNGAASPSTTPPSTA 99          
BLAST of CK935385 vs. ExPASy Swiss-Prot
Match: E131_ARATH (Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 9.780e-14
Identity = 37/83 (44.58%), Postives = 46/83 (55.42%), Query Frame = 1
Query:  217 WCVCKDGVGDPVLQKALXXXXXXXXXX-NPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 462
            +C+  DGV    LQ AL           + I     CY PN VK H S+A NSY+Q++G+A GSCDF G A + TTDPS   C
Sbjct:  272 YCIAMDGVDAKTLQAALDWACGPGRSNCSEIQPGESCYQPNNVKGHASFAFNSYYQKEGRASGSCDFKGVAMITTTDPSHGSC 354          
BLAST of CK935385 vs. ExPASy Swiss-Prot
Match: E13B_WHEAT (Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.716e-13
Identity = 33/82 (40.24%), Postives = 46/82 (56.10%), Query Frame = 1
Query:  217 WCVCKDGVGDPVLQKALXXXXXXXXXXNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 462
            WCV KDG     LQ  +           PI S G C++PN+++AH SY +N+Y+Q  G    +CDF G+  V ++DPS  GC
Sbjct:  377 WCVAKDGANGTDLQNNINYACGFVDC-KPIQSGGACFSPNSLQAHASYVMNAYYQANGHTDLACDFKGTGIVTSSDPSYGGC 457          
BLAST of CK935385 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.154e-12
Identity = 35/83 (42.17%), Postives = 47/83 (56.63%), Query Frame = 1
Query:  217 WCVCKDGVGDPVLQKALXXXXXXXXXX-NPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGC 462
            +C+ K+ V   +LQ AL           + +     CY P+ V AH +YA N+Y+Q+ G+A GSCDF G ATV TTDPS   C
Sbjct:  360 FCIAKEKVDRKMLQAALDWACGPGKVDCSALMQGESCYEPDDVVAHSTYAFNAYYQKMGKASGSCDFKGVATVTTTDPSRGTC 442          
The following BLAST results are available for this feature:
BLAST of CK935385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
E13L3_ARATH1.455e-2556.32Glucan endo-1,3-beta-glucosidase-like protein 3 OS... [more]
E13L2_ARATH7.471e-2250.57Glucan endo-1,3-beta-glucosidase-like protein 2 OS... [more]
E13L4_ARATH2.750e-1647.06Glucan endo-1,3-beta-glucosidase-like protein At1g... [more]
E131_ARATH9.780e-1444.58Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis ... [more]
E13B_WHEAT3.716e-1340.24Glucan endo-1,3-beta-glucosidase OS=Triticum aesti... [more]
E133_ARATH9.154e-1242.17Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004562_D07 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935385 ID=CK935385; Name=CK935385; organism=Citrus sinensis; type=EST; length=780bp
GGGGATAGCGTCACGAACTTTTTCATCTCTCTCTCAGTCCCTCTCAAAGG
CCTCAGCTTAGCTGCTGTGTGTGTTGTGACAAACTTTTCTCGGAGCCAAA
CAAGCAAGTATTTGTTATTATTATCTCTTCTCTAAGCTTCTTTTGCTCAT
TCAGTGATGGCTGTTTTGGTGCTTTTAGCTCTCTTCCTTGGCTTCACTGG
GCATTCAACTGCAAACTGGTGTGTTTGCAAAGATGGAGTGGGTGACCCAG
TTTTACAAAAAGCTTTGGACTAGGCTTGTGGAGCTGGGGCTGATTGTAAC
CCTATCCATTCCAATGGGCCTTGTTACAACCCCAACACTGTCAAAGCTCA
CTGCAGTTATGCTGTCAACAGCTATTTCCAGAGAAAGGGTCAAGCTCAAG
GCTCTTGTGATTTTTCCGGAAGTGCAACCGTTGCCACTACCGATCCCAGC
ACTGCTGGCTGTTCTTATCCTTCAAGTGCCAGCACTTCAGGCACCACCTC
AACAACACCAGTCACAGGTACTCCAGGCACAACCACACCCACAACAACTC
CGTCCACTACCACTCCAACGACTAACACACCAGGCAGCACCACACCAGGC
AGCACCACTCCGGGCAGCACCACTCCGTACACCACCACACCATCAACTGG
AACTGGAGTGTTGGGAGGAGTTGGTCCTGGTTTAGGCCCTTCGGGATCTG
GTATGCCCAACACAGACTATAGTCATNNNNGGATGAGACTGCAAAACTCT
GCCTTGTCTTTTTTGGTCGTCCTCTTGTTC
back to top