CK935396

Overview
NameCK935396
Unique NameCK935396
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935396_ssr39 microsatellite CK935396_ssr39:39..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2572 contig Csv1_Contig2572:1..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935396 vs. ExPASy Swiss-Prot
Match: RL142_ARATH (60S ribosomal protein L14-2 OS=Arabidopsis thaliana GN=RPL14B PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.110e-58
Identity = 116/134 (86.57%), Postives = 123/134 (91.79%), Query Frame = 3
Query:   90 MPFKRYVEIRRVALVNYGKDYGKLVVIVDVLDQNRALVDAPDMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKKENAA 491
            M FKRYVEI RVALVNYG+D+GKLVVIVDV+DQNRALVDAPDM R QMNFKRLSLTDI IDINRVP+KK+LIEAMEKADV NKWE SSWGRKLIVQKRRA LNDFDRFK+MLAKIKK G+VRQELAKLKKE  A
Sbjct:    1 MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAPDMERIQMNFKRLSLTDIVIDINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKKAGVVRQELAKLKKEITA 134          
BLAST of CK935396 vs. ExPASy Swiss-Prot
Match: RL141_ARATH (60S ribosomal protein L14-1 OS=Arabidopsis thaliana GN=RPL14A PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.474e-58
Identity = 115/134 (85.82%), Postives = 123/134 (91.79%), Query Frame = 3
Query:   90 MPFKRYVEIRRVALVNYGKDYGKLVVIVDVLDQNRALVDAPDMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKKENAA 491
            M FKR+VEI RVALVNYG+DYGKLVVIVDV+DQNRALVDAPDM R QMN KRLSLTDI IDINRVP+KK LIEAMEKADV NKWE SSWGRKLIVQKRRAALNDFDRFK+MLAKIK+ G+VRQELAKLK+E AA
Sbjct:    1 MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAPDMERIQMNLKRLSLTDIVIDINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKRAGIVRQELAKLKREIAA 134          
BLAST of CK935396 vs. ExPASy Swiss-Prot
Match: RL14_PEA (Probable 60S ribosomal protein L14 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.076e-53
Identity = 105/133 (78.95%), Postives = 117/133 (87.97%), Query Frame = 3
Query:   90 MPFKRYVEIRRVALVNYGKDYGKLVVIVDVLDQNRALVDAPDMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKKENA 488
            MPFKR+VEI RVAL+NYGKDYG+LVVIVDV+DQ RALVDAPDM RS +NFKRLSLTD+KIDI RVP+KK LI+A+E ADV NKW  SSWGRKLIV+K RAALNDFDRFK+MLAKIK+   VRQELAKLKK  A
Sbjct:    1 MPFKRFVEIGRVALINYGKDYGRLVVIVDVIDQTRALVDAPDMERSPINFKRLSLTDLKIDIKRVPKKKDLIKALEAADVKNKWAKSSWGRKLIVKKTRAALNDFDRFKIMLAKIKRAAGVRQELAKLKKTAA 133          
BLAST of CK935396 vs. ExPASy Swiss-Prot
Match: RL14_MOUSE (60S ribosomal protein L14 OS=Mus musculus GN=Rpl14 PE=2 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 1.912e-26
Identity = 60/132 (45.45%), Postives = 88/132 (66.67%), Query Frame = 3
Query:   90 MPFKRYVEIRRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKK 479
            M F+RYVE+ RVA +++G   GKLV IVDV+DQNRALVD P   + R  M FK + LTD  +      R+K + +A EKAD+N KW  + W +K+  ++R+A + DFDRFK+M AK  +  +++ E+ KL++
Sbjct:    1 MVFRRYVEVGRVAYISFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIDARERKAKMTDFDRFKVMKAKKMRNRIIKTEVKKLQR 132          
BLAST of CK935396 vs. ExPASy Swiss-Prot
Match: RL14_RAT (60S ribosomal protein L14 OS=Rattus norvegicus GN=Rpl14 PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 5.562e-26
Identity = 59/132 (44.70%), Postives = 88/132 (66.67%), Query Frame = 3
Query:   90 MPFKRYVEIRRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKK 479
            M F+R+VE+ RVA +++G   GKLV IVDV+DQNRALVD P   + R  M FK + LTD  +      R+K + +A EKAD+N KW  + W +K+  ++R+A + DFDRFK+M AK  +  +++ E+ KL++
Sbjct:    1 MVFRRFVEVGRVAYISFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIDARERKAKMTDFDRFKVMKAKKMRNRIIKTEVKKLQR 132          
BLAST of CK935396 vs. ExPASy Swiss-Prot
Match: RL14_LUMRU (60S ribosomal protein L14 OS=Lumbricus rubellus GN=RPL14 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.562e-26
Identity = 62/132 (46.97%), Postives = 84/132 (63.64%), Query Frame = 3
Query:   90 MPFKRYVEIRRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKK 479
            M F+R+VEI RVA   YG D GKLV IVDV+DQNRALVD P   + R  MNFK L LT++K       +   + +A EK +++ KWE S   +K+  +++R  L DF+RFKLM AK  +  L++ E  KL+K
Sbjct:    1 MSFRRFVEIGRVARAVYGPDQGKLVAIVDVIDQNRALVDGPCTHVARKSMNFKELELTNLKAKFPHSAKTGVVKKAWEKDEISKKWEESHLAKKIAAKEKRKTLTDFERFKLMKAKQARNRLIKIEFGKLRK 132          
BLAST of CK935396 vs. ExPASy Swiss-Prot
Match: RL14_HUMAN (60S ribosomal protein L14 OS=Homo sapiens GN=RPL14 PE=1 SV=4)

HSP 1 Score: 117.857 bits (294), Expect = 5.562e-26
Identity = 59/132 (44.70%), Postives = 87/132 (65.91%), Query Frame = 3
Query:   90 MPFKRYVEIRRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKK 479
            M F+R+VE+ RVA V++G   GKLV IVDV+DQNRALVD P   + R  M FK + LTD  +       +K + +A +KAD+N KW  + W +K+  ++R+A + DFDRFK+M AK  +  +++ E+ KL+K
Sbjct:    1 MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQK 132          
BLAST of CK935396 vs. ExPASy Swiss-Prot
Match: RL14_PIG (60S ribosomal protein L14 OS=Sus scrofa GN=RPL14 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.618e-25
Identity = 59/132 (44.70%), Postives = 88/132 (66.67%), Query Frame = 3
Query:   90 MPFKRYVEIRRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKK 479
            M F+R+VE+ RVA V++G   GKLV IVDV+DQNRALVD P   + R  M FK + LTD  +      R+K + +A EKAD+N KW  + W +K+  ++++A + DFDR+K+M A+  +  L++ E+ KL+K
Sbjct:    1 MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKLEVKKLQK 132          
BLAST of CK935396 vs. ExPASy Swiss-Prot
Match: RL14_GRIJA (60S ribosomal protein L14 OS=Griffithsia japonica GN=RPL14 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.618e-25
Identity = 66/134 (49.25%), Postives = 90/134 (67.16%), Query Frame = 3
Query:   90 MPFKRYVEIRRVALVNYGKDYGKLVVIVDVLDQNRALVDAPD--MVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEK---ADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLK 476
            M F R+VE  RVALV+YG+   KLVVIVD+LDQNR LVD+P   + R  +N KR++LT IK+D   + R   + E   K   A V+  +  S WG+KL  +++RAAL+DF RFK+M+A++KK   +  ELAKLK
Sbjct:    1 MTFTRFVEAGRVALVSYGEHLNKLVVIVDILDQNRILVDSPSHGLKRKVINVKRIALTSIKVD--DIARGAPVAEVKSKYTAAKVDETFAASGWGKKLAKREKRAALDDFGRFKVMVARMKKSKAINAELAKLK 132          
BLAST of CK935396 vs. ExPASy Swiss-Prot
Match: RL14_BOVIN (60S ribosomal protein L14 OS=Bos taurus GN=RPL14 PE=2 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 2.114e-25
Identity = 59/132 (44.70%), Postives = 88/132 (66.67%), Query Frame = 3
Query:   90 MPFKRYVEIRRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVNNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKK 479
            M F+R+VE+ RVA V++G   GKLV IVDV+DQNRALVD P   + R  M FK + LTD  +      R+K + +A EKAD+N KW  + W +K+  ++++A + DFDR+K+M A+  +  L++ E+ KL+K
Sbjct:    1 MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKIEVKKLQK 132          
The following BLAST results are available for this feature:
BLAST of CK935396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RL142_ARATH1.110e-5886.5760S ribosomal protein L14-2 OS=Arabidopsis thalian... [more]
RL141_ARATH2.474e-5885.8260S ribosomal protein L14-1 OS=Arabidopsis thalian... [more]
RL14_PEA1.076e-5378.95Probable 60S ribosomal protein L14 OS=Pisum sativu... [more]
RL14_MOUSE1.912e-2645.4560S ribosomal protein L14 OS=Mus musculus GN=Rpl14... [more]
RL14_RAT5.562e-2644.7060S ribosomal protein L14 OS=Rattus norvegicus GN=... [more]
RL14_LUMRU5.562e-2646.9760S ribosomal protein L14 OS=Lumbricus rubellus GN... [more]
RL14_HUMAN5.562e-2644.7060S ribosomal protein L14 OS=Homo sapiens GN=RPL14... [more]
RL14_PIG1.618e-2544.7060S ribosomal protein L14 OS=Sus scrofa GN=RPL14 P... [more]
RL14_GRIJA1.618e-2549.2560S ribosomal protein L14 OS=Griffithsia japonica ... [more]
RL14_BOVIN2.114e-2544.7060S ribosomal protein L14 OS=Bos taurus GN=RPL14 P... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_B02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935396 ID=CK935396; Name=CK935396; organism=Citrus sinensis; type=EST; length=713bp
GGGGGGACCTGGGGAACCCTAAATCGAAGCCTCTTGCCTCATTCATTCAT
CTCCTCGCTCCTCCGGCAGAGCCTTGAATATCTTCGAAAATGCCGTTCAA
GAGGTACGTGGAGATAAGAAGAGTTGCTCTCGTTAATTACGGCAAGGACT
ATGGGAAGCTTGTGGTCATCGTCGATGTCCTTGATCAAAACAGGGCTCTT
GTTGATGCCCCTGATATGGTGAGGAGCCAAATGAACTTCAAGAGGCTTTC
TCTCACGGATATTAAGATTGACATCAATCGAGTTCCCAGGAAGAAGTCTT
TGATTGAAGCCATGGAGAAGGCTGATGTGAATAACAAATGGGAAAACAGC
TCCTGGGGCAGGAAGCTGATTGTCCAGAAAAGGAGAGCGGCACTGAATGA
TTTTGATAGGTTCAAGCTCATGTTGGCAAAGATCAAGAAGGGTGGACTTG
TTCGACAGGAGCTTGCAAAACTCAAGAAGGAGAATGCAGCATAGAATTTC
TCTCTTGTGTTCCCCTTTCTGGTTTTTAGTTCTTACAGCTTCAATTTGAT
TCTATTAATGTATTGATTAATATGAGAAAACATCAGCTTGGCGTTTTTGG
GTTAATTGTTATTTGGACAGAATTTTTAGATATTTTCGTAATGTCCTTTC
TGTTATAATCTGATCTCAAGCTTTGTTGTTCGGTCAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
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