CK935399

Overview
NameCK935399
Unique NameCK935399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig821 contig Csv1_Contig821:113..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935399 vs. ExPASy Swiss-Prot
Match: H4_SILLA (Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 8.655e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 3
Query:  162 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 395
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CK935399 vs. ExPASy Swiss-Prot
Match: H4_PEA (Histone H4 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 8.655e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 3
Query:  162 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 395
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CK935399 vs. ExPASy Swiss-Prot
Match: H4_MAIZE (Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 8.655e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 3
Query:  162 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 395
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CK935399 vs. ExPASy Swiss-Prot
Match: H4_LOLTE (Histone H4 OS=Lolium temulentum PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 8.655e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 3
Query:  162 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 395
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CK935399 vs. ExPASy Swiss-Prot
Match: H4_FLATR (Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 8.655e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 3
Query:  162 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 395
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CK935399 vs. ExPASy Swiss-Prot
Match: H4_EUCGL (Histone H4 OS=Eucalyptus globulus PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 8.655e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 3
Query:  162 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 395
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CK935399 vs. ExPASy Swiss-Prot
Match: H4_CHEMJ (Histone H4 OS=Chelidonium majus PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 8.655e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 3
Query:  162 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 395
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CK935399 vs. ExPASy Swiss-Prot
Match: H4_ARATH (Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 8.655e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 3
Query:  162 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 395
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CK935399 vs. ExPASy Swiss-Prot
Match: H42_WHEAT (Histone H4 variant TH091 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 8.655e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 3
Query:  162 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 395
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
BLAST of CK935399 vs. ExPASy Swiss-Prot
Match: H41_WHEAT (Histone H4 variant TH011 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 8.655e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 3
Query:  162 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 395
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99          
The following BLAST results are available for this feature:
BLAST of CK935399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_SILLA8.655e-37100.00Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3[more]
H4_PEA8.655e-37100.00Histone H4 OS=Pisum sativum PE=1 SV=2[more]
H4_MAIZE8.655e-37100.00Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2[more]
H4_LOLTE8.655e-37100.00Histone H4 OS=Lolium temulentum PE=3 SV=2[more]
H4_FLATR8.655e-37100.00Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3[more]
H4_EUCGL8.655e-37100.00Histone H4 OS=Eucalyptus globulus PE=3 SV=3[more]
H4_CHEMJ8.655e-37100.00Histone H4 OS=Chelidonium majus PE=3 SV=3[more]
H4_ARATH8.655e-37100.00Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE... [more]
H42_WHEAT8.655e-37100.00Histone H4 variant TH091 OS=Triticum aestivum PE=3... [more]
H41_WHEAT8.655e-37100.00Histone H4 variant TH011 OS=Triticum aestivum PE=3... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_B06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935399 ID=CK935399; Name=CK935399; organism=Citrus sinensis; type=EST; length=599bp
GGGGACCAAAGCAAGCAACTAATCAAGGCACATTCAAATTTCTCTATCCA
AATTCTCTTTCAAGGAACAGCGGAAAGTCTTTTAAGTTCCTCGCTAAAAT
GTCTGGGCGCGGTAAGGGAGGCAAGGGATTGGGAAAAGGAGGCGCCAAGC
GTCACCGTAAGGTGCTTCGCGATAACATTCAGGGTATCACAAAGCCAGCA
ATCCGGCGTTTGGCTCGTAGAGGTGGAGTCAAGCGTATCAGTGGCTTGAT
CTACGAGGAGACACGTGGCGTCCTGAAGATATTCTTGGAGAACGTCATCC
GTGACGCCGTGACCTACACTGAGCACGCCAGGAGAAAGACCGTGACCGCG
ATGGACGTCGTTTACGCTCTCAAGAGGCAGGGCAGGACTCTTTATGGATT
TGGGGGTTAATTGTCTTAGGGTTCTGGAATTGAATGTTAATAGATCTTGA
CTCTAGATCTTGATCTGGTAGATGGGGCTCTTAGTAGTTTGTTATTAGGT
TGCTGCTTTGTAATTCTATCAAGTTAAATCTTATCTTTATATTTGAGGCA
ATATAGAACTGTTTTCTTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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