CK935404

Overview
NameCK935404
Unique NameCK935404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935404_ssr692 microsatellite CK935404_ssr692:692..703. BLAST: Citrus ESTs to Prunus persica proteins V1
CK935404_ssr37 microsatellite CK935404_ssr37:37..48. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CK935404 vs. ExPASy Swiss-Prot
Match: Y1648_ARATH (Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 8.665e-49
Identity = 123/228 (53.95%), Postives = 148/228 (64.91%), Query Frame = 2 
Query:  176 MGNTIGGRRK-AKVMKIDGETIKLKTPIQASEVVKDYPGYVLLDSEAVKHFGIRAKPLEPRQQLKPKKVYFLVELPKLPDEEKIT--------RRVRSGIQMSAKDRLECLMLSRRAVSDLTAVNVRSSHGSEVARGPGTGQMRVKMRLPRAQVEKLMEESANDGE-VAEKIVDLYVEKSXXXXXXXRCYSGELRPEEEWKAGQGGV--RR-----DFKARENKRVSF 808
            MGN+I  +RK AKVMKIDGET ++KTP+ A EV  DYPGYVLLDS+AVKHFG+R+KPLEP Q LKPKK YFLVELPKLP E            RRV SGI + AK+RL+ LMLSRR VSD+T    RS  G       G G   V++RLPR+Q+ KLMEE+ ND   +AEKI+ +Y+E+           SGEL        G+GGV  RR     + KARE K+VSF
Sbjct:    1 MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEPNQTLKPKKTYFLVELPKLPPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRRTVSDVTI--GRSDGGDGFGPELGPGHTSVRLRLPRSQITKLMEENNNDASAIAEKILGIYMER-----------SGEL------GGGRGGVDGRRELGSGEIKARE-KQVSF 208
The following BLAST results are available for this feature:
BLAST of CK935404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1648_ARATH8.665e-4953.95Uncharacterized protein At1g66480 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004562_A05 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935404 ID=CK935404; Name=CK935404; organism=Citrus sinensis; type=EST; length=877bp
GGGGGAACAGAAGAGAGTTACCGTTCCCACTTGTGTAATCAATCAATCAA
TTATAGCCTTTCAATAACACAATAATCCCAAAGAATTTCCTCAGATTCAC
ACCTCACGAAATTTGCATTTAAATTGCAAATCATAATTAACAAGCTCCAA
CGCATTCAAAATAAAGTATTAAGATATGGGGAACACAATAGGTGGAAGAA
GGAAAGCAAAAGTGATGAAGATTGATGGAGAAACAATAAAATTAAAGACT
CCAATTCAGGCTAGTGAAGTTGTTAAAGACTACCCAGGTTATGTTCTATT
GGATTCAGAAGCTGTGAAGCATTTTGGCATTAGGGCAAAACCCTTGGAGC
CACGGCAACAACTTAAGCCCAAGAAAGTATATTTCTTGGTGGAGCTGCCC
AAGCTTCCTGATGAGGAAAAGATCACGAGAAGAGTGCGTTCTGGGATTCA
GATGAGCGCTAAGGACAGGCTCGAGTGCTTGATGCTGTCAAGGAGGGCGG
TTTCGGATCTTACTGCGGTTAATGTAAGGTCGAGCCACGGCAGTGAGGTG
GCACGGGGACCGGGGACGGGTCAGATGAGGGTCAAAATGAGGCTGCCTAG
GGCTCAAGTTGAGAAGTTGATGGAAGAGAGTGCAAATGATGGAGAGGTGG
CTGAAAAGATTGTTGATCTTTATGTGGAAAAATCCGGTGGAGGCGGCGGC
GGCGGACGTTGCTACAGTGGTGAGCTTCGGCCGGAGGAGGAATGGAAGGC
GGGTCAAGGTGGCGTCAGAAGAGATTTTAAGGCGCGTGAGAATAAGCGAG
TAAGTTTTGTCCCCACGGAAGAAGAAATTCATTTAAATGTGGCCTCGCAA
TAGCAATTGATGGAGTTGATCAAATGG
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