CK935412

Overview
NameCK935412
Unique NameCK935412
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:295..595. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935412 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.781e-28
Identity = 55/100 (55.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:    1 DAFIEAAQAFPGFGNSGNETMGKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEAL 300
            DAFI AA+A+P FGN+G+    KREIAAF  QT HETTGGW  AP G YAWGYC++R+ +P++              QYYGRGPIQ++WN NY +CG A+
Sbjct:  106 DAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSTYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAI 205          
BLAST of CK935412 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.781e-28
Identity = 55/101 (54.46%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    1 DAFIEAAQAFPGFGNSGNETMGKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEAL 300
            DAF+ AA++FP FG +G+  + KRE+AAF  QT HETTGGW  AP G YAWGYC++++ +P+S+           PG+ YYGRGP+QL+WN NY  CGEAL
Sbjct:   32 DAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPCGEAL 132          
BLAST of CK935412 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.781e-28
Identity = 55/100 (55.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:    1 DAFIEAAQAFPGFGNSGNETMGKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEAL 300
            DAFI AA+A+P FGN+G+    KREIAAF  QT HETTGGW  AP G YAWGYC++R+ +P++              QYYGRGPIQ++WN NY +CG A+
Sbjct:  105 DAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSAYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAI 204          
BLAST of CK935412 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 6.768e-28
Identity = 54/100 (54.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:    1 DAFIEAAQAFPGFGNSGNETMGKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEAL 300
            DAF+ AA+AFP F N G+    KREIAAF  QT HETTGGW  AP G YAWGYC++R+ +P++              QYYGRGPIQ++WN NY +CG A+
Sbjct:   98 DAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQNPSTYCQASSEFPCASGKQYYGRGPIQISWNYNYGQCGRAI 197          
BLAST of CK935412 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.508e-27
Identity = 54/101 (53.47%), Postives = 71/101 (70.30%), Query Frame = 1
Query:    1 DAFIEAAQAFPGFGNSGNETMGKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEAL 300
            DAFI AA++FPGFG +G+    K+EIAAFF QT HETTGGW  AP G Y+WGYC+ ++ +P+S+            G+ YYGRGP+QL+WN NY +CG A+
Sbjct:  101 DAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNYGQCGRAI 201          
BLAST of CK935412 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.969e-27
Identity = 57/101 (56.44%), Postives = 69/101 (68.32%), Query Frame = 1
Query:    1 DAFIEAAQAFPGFGNSGNETMGKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEAL 300
            +AFI AA++F GFG +G+ T  KRE+AAFFAQT HETTGGW  AP G YAWGYCY+R+     S           PGQ YYGRGPIQ+++N NY  CG A+
Sbjct:  115 NAFITAARSFRGFGTTGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYCVQSSQWPCAPGQKYYGRGPIQISYNYNYGPCGRAI 215          
BLAST of CK935412 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.572e-27
Identity = 58/101 (57.43%), Postives = 70/101 (69.31%), Query Frame = 1
Query:    1 DAFIEAAQAFPGFGNSGNETMGKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIR-QVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEAL 300
            DAFI AA+AFPGFG +G+ T  KREIAAF AQT HETTGGW  AP G YAWGYCY+R Q SP +              +YYGRGPIQ+++N NY + G+A+
Sbjct:   95 DAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQWPCAAGRKYYGRGPIQISYNYNYGQAGKAI 195          
BLAST of CK935412 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 5.730e-27
Identity = 55/100 (55.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:    1 DAFIEAAQAFPGFGNSGNETMGKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEAL 300
            +AFI AA+ FP FGN+G++ M KREIAAF  QT HETTGGW DAP G YAWGYCY+++++                 QY GRGPIQL+WN NY  CG+ L
Sbjct:  119 NAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEINCQPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNYGLCGDDL 218          
BLAST of CK935412 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.483e-27
Identity = 56/101 (55.45%), Postives = 68/101 (67.33%), Query Frame = 1
Query:    1 DAFIEAAQAFPGFGNSGNETMGKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEAL 300
            +AFI AA++FPGFG SG+ T  KREIAAFFAQT HETTGGW  AP G YAWGYC++R+                 PG +Y+GRGPIQ++ N NY  CG A+
Sbjct:  105 NAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAI 205          
BLAST of CK935412 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 7.483e-27
Identity = 56/101 (55.45%), Postives = 68/101 (67.33%), Query Frame = 1
Query:    1 DAFIEAAQAFPGFGNSGNETMGKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEAL 300
            +AFI AA++FPGFG SG+ T  KREIAAFFAQT HETTGGW  AP G YAWGYC++R+                 PG +Y+GRGPIQ++ N NY  CG A+
Sbjct:  110 NAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAI 210          
The following BLAST results are available for this feature:
BLAST of CK935412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
CHIT_PHAVU1.781e-2855.00Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHIT_CARPA1.781e-2854.46Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI5_PHAVU1.781e-2855.00Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_PEA6.768e-2854.00Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI2_BRANA1.508e-2753.47Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI3_TOBAC1.969e-2756.44Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHIB_VITVI2.572e-2757.43Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI6_POPTR5.730e-2755.00Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI2_TOBAC7.483e-2755.45Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_TOBAC7.483e-2755.45Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004562_B01 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IF_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935412 ID=CK935412; Name=CK935412; organism=Citrus sinensis; type=EST; length=301bp
GATGCTTTTATAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTCTGG
AAATGAAACCATGGGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTG
GCCATGAAACTACTGGGGGATGGACCGATGCACCTGGTGGAGAATATGCT
TGGGGATATTGCTATATTAGGCAAGTTAGCCCTGCGTCGTCCGACTACTG
TTATCCTTACTGTCCATGTCCCTTGCCAGGGCAATACTATGGCCGAGGTC
CAATTCAACTCACTTGGAATTGCAATTACTTAAGGTGCGGAGAAGCCTTG
G
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