CK935414

Overview
NameCK935414
Unique NameCK935414
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935414_ssr151 microsatellite CK935414_ssr151:151..162. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12958 contig Csv1_Contig12958:9..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK935414 vs. ExPASy Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 1.556e-40
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 1 
Query:  175 TVETYKIYIFKVPKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHVVSEGTKAVTK 438
            +VETYKIYIFKV KQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKH VSEGTKAVTK
Sbjct:   57 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 144
[Close]
BLAST of CK935414 vs. ExPASy Swiss-Prot
Match: H2B3_MEDTR (Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 2.032e-40
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 1 
Query:  175 TVETYKIYIFKVPKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHVVSEGTKAVTK 438
            +VETYKIYIFKV KQVHPDIG+SSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKH VSEGTKAVTK
Sbjct:   47 SVETYKIYIFKVLKQVHPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 134
[Close]
BLAST of CK935414 vs. ExPASy Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 3.466e-40
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 1 
Query:  175 TVETYKIYIFKVPKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHVVSEGTKAVTK 438
            +VETYKIYIFKV KQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKH VSEGTKAVTK
Sbjct:   56 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 143
[Close]
BLAST of CK935414 vs. ExPASy Swiss-Prot
Match: H2B_CAPAN (Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 4.527e-40
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 1 
Query:  175 TVETYKIYIFKVPKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHVVSEGTKAVTK 438
            ++ETYKIYIFKV KQVHPDIGISSK+MGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKH VSEGTKAVTK
Sbjct:   54 SIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 141
[Close]
BLAST of CK935414 vs. ExPASy Swiss-Prot
Match: H2B3_SOLLC (Histone H2B.3 (Fragment) OS=Solanum lycopersicum GN=H2B-3 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.527e-40
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 1 
Query:  178 VETYKIYIFKVPKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHVVSEGTKAVTK 438
            VETYKIYIFKV KQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKH VSEGTKAVTK
Sbjct:   47 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 133
[Close]
BLAST of CK935414 vs. ExPASy Swiss-Prot
Match: H2B1_ARATH (Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790 PE=1 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 4.527e-40
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 1 
Query:  178 VETYKIYIFKVPKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHVVSEGTKAVTK 438
            VETYKIYIFKV KQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLPGELAKH VSEGTKAVTK
Sbjct:   58 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 144
[Close]
BLAST of CK935414 vs. ExPASy Swiss-Prot
Match: H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 163.696 bits (413), Expect = 7.722e-40
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 1 
Query:  175 TVETYKIYIFKVPKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHVVSEGTKAVTK 438
            +VETYKIYIFKV KQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPGELAKH VSEGTKAVTK
Sbjct:   59 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 146
[Close]
BLAST of CK935414 vs. ExPASy Swiss-Prot
Match: H2B2_MEDTR (Probable histone H2B.2 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 163.31 bits (412), Expect = 1.009e-39
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 1 
Query:  175 TVETYKIYIFKVPKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHVVSEGTKAVTK 438
            +VETYKIYIFKV KQVHPDIGISSKAMGIMNSFINDIFEKL QESSRLARYNKKPTITSREIQTAVRLVLPGELAKH VSEGTKAVTK
Sbjct:   57 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHDVSEGTKAVTK 144
[Close]
BLAST of CK935414 vs. ExPASy Swiss-Prot
Match: H2B9_ARATH (Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570 PE=1 SV=3)

HSP 1 Score: 162.925 bits (411), Expect = 1.317e-39
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 1 
Query:  175 TVETYKIYIFKVPKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHVVSEGTKAVTK 438
            + ETYKIYIFKV KQVHPDIGIS KAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKH VSEGTKAVTK
Sbjct:   41 STETYKIYIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 128
[Close]
BLAST of CK935414 vs. ExPASy Swiss-Prot
Match: H2B7_ARATH (Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 162.925 bits (411), Expect = 1.317e-39
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 1 
Query:  175 TVETYKIYIFKVPKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHVVSEGTKAVTK 438
            +VETYKIYIFKV KQVHPDIGISSKAMGIMNSFINDIFEKLA ESS+LARYNKKPTITSREIQTAVRLVLPGELAKH VSEGTKAVTK
Sbjct:   54 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 141
The following BLAST results are available for this feature:
BLAST of CK935414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2B1_MEDTR1.556e-4096.59Probable histone H2B.1 OS=Medicago truncatula PE=3... [more]
H2B3_MEDTR2.032e-4095.45Probable histone H2B.3 OS=Medicago truncatula PE=3... [more]
H2B_GOSHI3.466e-4095.45Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV... [more]
H2B_CAPAN4.527e-4094.32Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3[more]
H2B3_SOLLC4.527e-4096.55Histone H2B.3 (Fragment) OS=Solanum lycopersicum G... [more]
H2B1_ARATH4.527e-4096.55Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790... [more]
H2B11_ARATH7.722e-4094.32Histone H2B.11 OS=Arabidopsis thaliana GN=At5g5991... [more]
H2B2_MEDTR1.009e-3995.45Probable histone H2B.2 OS=Medicago truncatula PE=3... [more]
H2B9_ARATH1.317e-3994.32Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570... [more]
H2B7_ARATH1.317e-3994.32Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004555_H08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935414 ID=CK935414; Name=CK935414; organism=Citrus sinensis; type=EST; length=661bp
GGGGGAAATCGAAATAACAAAGTAAAAAGAAATCAAATGGCAGCGAAAGC
CGAGAAACAGCCCGCCGAGAAGAAGCTGGCAGCCGAGAAGGCCCCTGCTG
CCGAGAAAAAATCGAGGGCTGAGAAGAAGCTTCCGAAAGACGGCGCCGAC
AAGAAGAAGAAGAAAGTGAAGAAGACCGTGGAGACCTACAAGATCTACAT
ATTCAAGGTGCCGAAGCAGGTGCATCCTGATATAGGAATCTCCAGCAAGG
CCATGGGTATCATGAACAGCTTTATCAACGATATCTTCGAGAAATTGGCT
CAGGAGTCGTCTCGTCTCGCGAGATACAACAAGAAGCCCACTATCACTTC
TCGTGAGATCCAGACTGCTGTTAGACTTGTCTTGCCCGGTGAGCTTGCCA
AGCATGTCGTTTCTGAAGGCACCAAGGCTGTCACTAAGCTTACTAGCTCT
TAATGAACCTATAGCTTCAATAATTCAATTAGTATCTTCTCTTTCTAGCT
TGGGCTCTGCAATTTTTAAGGTCCTGTTTCTTTTATTTTCCTTTTGGTTG
TAGATTTTCTCTTTTGTTTACTTTTTGTATCTACCCTACCCAACAACCTA
ATCGAAGTTCTTTTTGCTCAAGTTCAATTACCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
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