CK935417

Overview
NameCK935417
Unique NameCK935417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935417_ssr803 microsatellite CK935417_ssr803:803..817. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1815 contig Csv1_Contig1815:1..850. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 3.550e-68
Identity = 136/210 (64.76%), Postives = 162/210 (77.14%), Query Frame = 2
Query:  149 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGKVDG-PPMLAGSKIDVISGADLEISEMKKL 775
            KIDYVFKVV+IGDSAVGKSQIL+RF +NEF  DSKSTIGVEFQTRT+ I+ K +KAQIWDTAGQERYRAVTSAYYRGA+GA++VYDITKRQ+FDH+ RW+EELR HAD +I IILIGNK DLV+ R V  EDA +FAE +GLFF E SAL   NV++AF  +L EIY  V+KK L     + +G    L+G KI +I G   EI   + +
Sbjct:   13 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKSLAADESQGNGNSASLSGQKI-IIPGPAQEIPAKRNM 221          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 4.636e-68
Identity = 133/208 (63.94%), Postives = 162/208 (77.88%), Query Frame = 2
Query:  149 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGKVDG-PPMLAGSKIDVISGADLEISEMK 769
            KIDYVFKVV+IGDSAVGKSQIL+RF +NEF  DSK+TIGVEFQTRT+ I  K +KAQIWDTAGQERYRAVTSAYYRGA+GA++VYDITKRQ+FDH+ RW+EELRAHAD +I I+LIGNK+DL D RAV  EDA +FA+ +GLFF E SA+   N++ AF  +L EI+  V+KK L   + + +G P  L G KI ++ G    I E K
Sbjct:   11 KIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIVNKKNLAADDNQSNGNPASLTGKKI-LVPGPGQVIPEKK 217          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 3.925e-67
Identity = 134/201 (66.67%), Postives = 158/201 (78.61%), Query Frame = 2
Query:  140 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGKVD---GPPMLAGSKIDV 733
            +  KIDYVFKVV+IGDSAVGKSQ+L+RF +NEF  DSK+TIGVEFQTRT+ I+ + +KAQIWDTAGQERYRAVTSAYYRGA+GA++VYDITKRQSFDHVARW+EELR HAD +I I+LIGNKSDL  +R V  EDA +FAE + LFF E SAL   NV+ AF  +L EIY  VSKK L   N +VD      +L G+KI V
Sbjct:   11 VGQKIDYVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKNL-VANEEVDSSGNSSLLKGTKIVV 210          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 2.154e-65
Identity = 126/194 (64.95%), Postives = 151/194 (77.84%), Query Frame = 2
Query:  149 KIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECG-NGKVDGPPMLAGSKI 727
            KIDYVFKVV+IGDSAVGK+QIL+RF +NEF  DSK+TIGVEFQTRT+ I  K +KAQIWDTAGQERYRAVTSAYYRGA+GA++VYDITKRQ+FDH+ RW+EELRAHAD +I I+L GNK+DL D RAV  EDA +FA+ +GLFF E SA+    ++ AF  +L EI+  V+KK L    N     P  L G KI
Sbjct:   11 KIDYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTVLTEIFNIVNKKNLAADENQSNSNPASLTGKKI 204          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 8.469e-62
Identity = 120/217 (55.30%), Postives = 160/217 (73.73%), Query Frame = 2
Query:  140 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECG-NGKVDGPPMLAGSKIDVISGADLEISEMKKLSTCS 787
            + D  DY+FKVV+IGDS VGKS +LSRFTKNEF  +SKSTIGVEF TRT+ ++GK++KAQIWDTAGQERYRA+TSAYYRGA+GA++VYD+T+R +F++V RW++EL+ H D +I ++L+GNKSDL  + AV  ED   +AE + L F E SAL   NV+ AF  +L +IY   SKK++E G +G    P    G KI+V +    ++S +KKL  CS
Sbjct:    6 VEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKKQVEAGEDGNASVP---KGEKIEVKN----DVSALKKLGCCS 215          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 3.218e-61
Identity = 124/218 (56.88%), Postives = 156/218 (71.56%), Query Frame = 2
Query:  134 NMIPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGKVDGPPMLAGSKIDVISGADLEISEMKKLSTCS 787
            N +  + DY+FK+V+IGDS VGKS ILSRFT+NEF  +SKSTIGVEF TRT+ + GK +KAQIWDTAGQERYRA+TSAYYRGA+GA++VYDITKRQ+FD+V RW+ ELR HADS+I I++ GNKSDL  +RAVS ED    AE +GL F E SAL   N++ AF  +L EIY  +SKK L       + P    G+ I+V      + S  ++ S CS
Sbjct:    3 NRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKKALAAQEASSNLPGQ--GTTINV-----ADASANQRRSCCS 213          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 7.170e-61
Identity = 122/214 (57.01%), Postives = 159/214 (74.30%), Query Frame = 2
Query:  146 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGKVDGPPMLAGSKIDVISGADLEISEMKKLSTCS 787
            D  DY+FK+V+IGDS VGKS +LSRF++NEF  +SKSTIGVEF TR++ ++ KI+KAQIWDTAGQERYRA+TSAYYRGA+GA+VVYDIT+  +F++V RW++ELR H D +I I+L+GNK+DL  +RAVS EDA  FAE +  FF E SAL   NV+ AF  +L EIY  V +K LE G+   D   +  G  I+V  G D ++S +KK+  CS
Sbjct:    9 DDYDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKALEVGD---DPAALPKGQTINV--GKD-DVSAVKKVGCCS 216          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 9.364e-61
Identity = 116/202 (57.43%), Postives = 149/202 (73.76%), Query Frame = 2
Query:  140 IPDKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGKVDGPPMLAGSKIDVISGA 745
            +  +  Y+FK+V+IGDS VGKS ILSRFT+N F  DSKSTIGVEF T+++ + GK IKAQIWDTAGQERYRA+TSAYYRGA+GA++VYDITKRQSFD+V RW+ ELR HADSSI I+++GNKSDL+ +RAVS ++    AE +GLFF E SA+   NV+ AF  ++ E+YG V++K L          P+ +  K   I  A
Sbjct:    5 VDHEYSYLFKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYGIVNRKALAAKEAAAASAPLPSQGKTISIDSA 206          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.597e-60
Identity = 118/213 (55.40%), Postives = 158/213 (74.18%), Query Frame = 2
Query:  146 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGKVDGPPMLAGSKIDVISGADLEISEMKKLSTC 784
            D+ DY+FK V+IGDS VGKS +L RFT+NEF  +SKSTIGVEF TR + ++ K IKAQIWDTAGQERYRA+TSAYYRGA+GA++VYDITK+ SFD+V RW++ELR HADS+I I+L+GNK+DL+ +RAVS E+A  FA +  L F E SA++  NV+ AF  +L EI+  VS + LE G+   DG    AG  +++    + ++++ K  S C
Sbjct:    5 DEYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEAGD---DGVHPTAGQTLNIAPTMN-DLNKKKSSSQC 213          
BLAST of CK935417 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.086e-60
Identity = 119/214 (55.61%), Postives = 157/214 (73.36%), Query Frame = 2
Query:  146 DKIDYVFKVVVIGDSAVGKSQILSRFTKNEFFFDSKSTIGVEFQTRTVTINGKIIKAQIWDTAGQERYRAVTSAYYRGALGAVVVYDITKRQSFDHVARWVEELRAHADSSIRIILIGNKSDLVDMRAVSAEDAVKFAEDQGLFFSEASALNGDNVDTAFFRLLQEIYGAVSKKELECGNGKVDGPPMLAGSKIDVISGADLEISEMKKLSTCS 787
            D+ DY+FKVV+IGDS VGKS +LSRFTKNEF  +SKSTIGVEF TR++ ++ K+IKAQIWDTAGQERYRA+TSAYYRGA+GA++VYD+T+  +F++V  W++ELR H D +I ++L+GNKSDL  + AV  EDA  FAE + L+F E SAL   NV+ AF  +L +I+  VSKK +E  +   + P    G KID+  G D  +S +KK   CS
Sbjct:    8 DEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASESANVPS--KGDKIDI--GKD--VSAVKKGGCCS 215          
The following BLAST results are available for this feature:
BLAST of CK935417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11A_LOTJA3.550e-6864.76Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RB11D_TOBAC4.636e-6863.94Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RGP1_ORYSJ3.925e-6766.67Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RB11C_TOBAC2.154e-6564.95Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
RAA1B_ARATH8.469e-6255.30Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RB2BV_BETVU3.218e-6156.88Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RB11B_TOBAC7.170e-6157.01Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RGP2_ORYSJ9.364e-6157.43Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
YPT3_SCHPO1.597e-6055.40GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RAA1C_ARATH2.086e-6055.61Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004555_H11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935417 ID=CK935417; Name=CK935417; organism=Citrus sinensis; type=EST; length=850bp
GGGGAGAGGAATATTTAAAAAGAATACATCCCCCTCCAGAGTGAGAATTT
TTTCTGGTGAAAGTGAAAAAAAGAAAAAAATGAACGAAGAAATGAGTGGC
GATGCCACCGATCATCGCCATCAACAACAAGAGAATATGATTCCTGACAA
AATAGACTATGTGTTCAAGGTAGTGGTGATCGGTGACTCGGCCGTGGGCA
AGTCTCAGATTCTTTCGAGATTCACCAAGAATGAGTTTTTCTTTGACTCG
AAATCAACCATTGGCGTCGAGTTCCAAACCAGAACTGTCACCATCAACGG
CAAGATCATCAAAGCCCAGATCTGGGACACTGCTGGCCAAGAAAGGTACC
GGGCGGTGACAAGTGCGTACTATAGAGGTGCCTTAGGGGCCGTAGTAGTG
TACGACATCACGAAACGACAGTCGTTTGATCATGTGGCTAGGTGGGTGGA
GGAACTGCGCGCTCATGCTGACAGCTCCATCAGGATCATACTGATTGGAA
ACAAATCTGATCTTGTGGATATGCGGGCAGTTTCGGCGGAGGATGCTGTT
AAGTTTGCAGAGGATCAAGGCTTGTTTTTCTCTGAGGCATCCGCACTTAA
TGGTGACAATGTGGATACTGCCTTTTTCAGGCTGCTCCAGGAAATTTACG
GCGCCGTTTCTAAGAAGGAATTGGAATGCGGCAACGGCAAAGTTGATGGG
CCGCCGATGCTTGCGGGTTCCAAGATTGATGTTATCTCTGGGGCTGATTT
GGAAATTAGTGAGATGAAGAAATTATCTACTTGCTCTTGTTGATTTTTCT
TTTTATTATTATTATTATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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