CK935454

Overview
NameCK935454
Unique NameCK935454
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length947
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK935454 vs. ExPASy Swiss-Prot
Match: CP21C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial OS=Arabidopsis thaliana GN=CYP21-3 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 8.294e-16
Identity = 47/108 (43.52%), Postives = 60/108 (55.56%), Query Frame = 1 
Query:  388 MARMKPQALLIQSKRKKGPTRISAKTXXXXXXXXXXXXXXXXXTYRHWSHSQRSNEQIGNESSTVEDDAYAVSKKFDLPGHAVLNTSKGYIIVELFKDGSPETVDKFI 711
            MA++KPQALL QSK+KKGP+RIS                     YR W+H  RS     N  S +ED A+   K  DLP  A L+T KG + +ELFKD +P  VD+F+
Sbjct:    1 MAKIKPQALLQQSKKKKGPSRISITNIVIYTLAVLLLVFVLFSAYRRWTH--RSEIPTHNGRSVLEDAAFPGMKNVDLPRFATLDTGKGSVTIELFKDTAPNVVDQFM 106
The following BLAST results are available for this feature:
BLAST of CK935454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CP21C_ARATH8.294e-1643.52Peptidyl-prolyl cis-trans isomerase CYP21-3, mitoc... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004555_D07 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935454 ID=CK935454; Name=CK935454; organism=Citrus sinensis; type=EST; length=947bp
GGGGATCCAACTTTTATTATCCGAAAAATCCTTCTATATTTACTTATCTT
TCATCTAAATCCGTCGCCGTTTAGCTGAATTTTAGTTCAATTAATTTCTT
TGCCTGCTCATGCTTTATTTAATGTTCAGTGCAGTCTATTACCGTATTTA
GTTAAATTTAATTAAACCTCAAGTTAAATCTTGGTATGTAGAAGCTTCTC
GACGATTGAACCGACTTAAATTTTTTGAATTTGATTTACTAAGATGTATA
CAACTGATCTGAAAGTTGTAATTTTGGAGAATTGTTGGATATCAATATGT
TTGTTGTTTAGATAATCAGTTAGTTGAATCTGAGTTTTGAGTACGGATTG
AGTGTTTGCAGATTTTCCGAAATAAAGTTTCAGCATCATGGCGAGGATGA
AACCGCAGGCTTTGTTAATTCAAAGCAAAAGGAAGAAGGGGCCTACACGA
ATCAGTGCCAAGACGATCATCATTTGCAATTTAATTGTCGTGTTGATAGT
GTTGTGCTTAGTTGTCACATATAGACATTGGTCGCATTCACAAAGGTCAA
ATGAACAAATAGGGAATGAATCGTCAACCGTTGAGGATGATGCCTATGCG
GTTTCAAAGAAGTTTGATCTTCCTGGCCATGCTGTTTTAAATACATCTAA
AGGTTATATAATAGTGGAACTCTTCAAAGATGGTTCACCAGAAACCGTGG
ATAAATTTATTGACTTGTGGTAAGTATTTTCAGGCATCTACATCCTTTTT
TTTCCAGTTGCGAATTGTCGCTTCCTTTACCGTCTTTGTTCTCCATAGAT
GCGTGAACTGCTGATAATCAGTTAGTCTTATGCTCTTATTCTATTAACTT
GTTCTTTCATTTGGGTCCTCGATGGTGTATAGATATATTTATAATTTTGT
AGTAGCATTGTATTGCAGTTTTGTGTGGATGTAGCTTGTGATCCATG
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