CK935460

Overview
NameCK935460
Unique NameCK935460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935460_ssr618 microsatellite CK935460_ssr618:618..632. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10604 contig Csv1_Contig10604:87..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935460 vs. ExPASy Swiss-Prot
Match: CAX3_ARATH (Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.257e-69
Identity = 146/252 (57.94%), Postives = 170/252 (67.46%), Query Frame = 1
Query:   52 EPW--LMENGIVKVLSK----EIRHGRTAHNMSSSSLRKKSDLTLVSKIRFPCLRRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTGGGLLNATCGNATELIIAIFALYGRKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAA---ASSDITAKATLQLSRASSIVMLIGYFAYLVFQLW 780
            EPW  + ENG   V +K    E+RHGRTAHNMSSSSLRKKSDL LV K+    L+  L+N+QEVILGTKL++LF AIPLAI+   + +  P +F LSL+GLTPLAERVSFLTEQ+AFYTGPT GGLLNATCGNATELIIAI AL   K+ VVKY                  F GGIAN+R+EQ++DRKQADVN                 KYAA    S+ +  K +L LSR SSIVMLI Y AYL+FQLW
Sbjct:    6 EPWAAIAENGNANVTAKGSSRELRHGRTAHNMSSSSLRKKSDLRLVQKVPCKTLKNILSNLQEVILGTKLTLLFLAIPLAILANSYNYGRPLIFGLSLIGLTPLAERVSFLTEQLAFYTGPTVGGLLNATCGNATELIIAILALANNKVAVVKYSLLGSILSNLLLVLGTSLFFGGIANIRREQRFDRKQADVNFFLLLMGLLCHLLPLLLKYAATGEVSTSMINKMSLTLSRTSSIVMLIAYIAYLIFQLW 257          
BLAST of CK935460 vs. ExPASy Swiss-Prot
Match: CAX1_ARATH (Vacuolar cation/proton exchanger 1 OS=Arabidopsis thaliana GN=CAX1 PE=1 SV=3)

HSP 1 Score: 260.766 bits (665), Expect = 6.237e-69
Identity = 145/252 (57.54%), Postives = 170/252 (67.46%), Query Frame = 1
Query:   49 TEPW-LMENG----IVKVLSKEIRHGRTAHNMSSSSLRKKSDLTLVSKIRFPCLRRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTGGGLLNATCGNATELIIAIFALYGRKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKY---AAASSDITAKATLQLSRASSIVMLIGYFAYLVFQLW 780
            TEPW + ENG      K  S+E+R GRTAHNMSSSSLRKKSDL ++ K+ +  L+  L+N+QEVILGTKL++LFPAIP AII    G ++PW+F LSLLGLTPLAERVSFLTEQ+AFYTGPT GGLLNATCGNATELIIAI AL   K+ VVKY                  FCGGIAN+R+EQ++DRKQADVN                  Y     AS+ + +   L +SR  SIVMLI Y AYLVFQLW
Sbjct:    6 TEPWSVAENGNPSITAKGSSRELRLGRTAHNMSSSSLRKKSDLRVIQKVPYKGLKDFLSNLQEVILGTKLAILFPAIPAAIICTYCGVSQPWIFGLSLLGLTPLAERVSFLTEQLAFYTGPTLGGLLNATCGNATELIIAILALTNNKVAVVKYSLLGSILSNLLLVLGTSLFCGGIANIRREQRFDRKQADVNFFLLLLGFLCHLLPLLVGYLKNGEASAAVLSDMQLSISRGFSIVMLISYIAYLVFQLW 257          
BLAST of CK935460 vs. ExPASy Swiss-Prot
Match: CAX1A_ORYSJ (Vacuolar cation/proton exchanger 1a OS=Oryza sativa subsp. japonica GN=CAX1a PE=1 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.665e-61
Identity = 135/231 (58.44%), Postives = 150/231 (64.94%), Query Frame = 1
Query:  106 HGR--TAHNMSSSSLRKKSDLTLVSKIRFPCLRRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTGGGLLNATCGNATELIIAIFALYGRKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAAS-----SDITAKATLQLSRASSIVMLIGYFAYLVFQL 777
            HGR  TAHNMSSSSLRKKSD  LV K+    LR  LAN+QEV L TKL+VLFPA+PLAI  QCF F + WVFALSLLGL PLAERVSFLTEQIA YTGPT GGLLNATCGNATELIIA+FAL   KI+VVK                   FCGG+ NL   Q YDR Q+DV++                +YA A+     S  +A A+L LSRA S VML  Y AYL FQL
Sbjct:   19 HGRSRTAHNMSSSSLRKKSDAALVRKVPVAPLRPLLANLQEVFLATKLAVLFPAVPLAIAAQCFRFDQVWVFALSLLGLIPLAERVSFLTEQIALYTGPTVGGLLNATCGNATELIIALFALLKGKIEVVKCSLLGSVLSNLLLVLGTSLFCGGVVNLGARQPYDRNQSDVSTALLFLAVLCHSAPLLLRYAVAAGEHSVSATSAAASLDLSRACSFVMLASYVAYLFFQL 249          
BLAST of CK935460 vs. ExPASy Swiss-Prot
Match: CAX4_ARATH (Vacuolar cation/proton exchanger 4 OS=Arabidopsis thaliana GN=CAX4 PE=1 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 1.263e-53
Identity = 111/224 (49.55%), Postives = 145/224 (64.73%), Query Frame = 1
Query:  112 RTAHNMSSSSL-RKKSDLTLVSKIRFPCLRRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTGGGLLNATCGNATELIIAIFALYGRKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITAKATLQLSRASSIVMLIGYFAYLVFQLW 780
            R    +S+SSL RK+SDL L+S++R+  +RR L N+QEV+LGTKL +LFPA+PLA++   +     WVFALSLLGLTPLAER+SFLTEQIAF+TGPT GGL+NATCGNATE+IIAI A+  RK+ +VK                   F GGI+NLRK Q +D +Q D+NS                ++   + +      + LSRASS VMLI Y A+L+F L+
Sbjct:   32 RVRRTVSASSLIRKRSDLKLISRVRWEFMRRILTNLQEVLLGTKLFILFPAVPLAVVAHRYDCPRAWVFALSLLGLTPLAERISFLTEQIAFHTGPTVGGLMNATCGNATEMIIAILAVGQRKMRIVKLSLLGSILSNLLFVLGTSLFLGGISNLRKHQSFDPRQGDMNSMLLYLALLCQTLPMIMRFTMEAEEYDGSDVVVLSRASSFVMLIAYLAFLIFHLF 255          
BLAST of CK935460 vs. ExPASy Swiss-Prot
Match: CAX1B_ORYSJ (Vacuolar cation/proton exchanger 1b OS=Oryza sativa subsp. japonica GN=CAX1b PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.381e-52
Identity = 118/225 (52.44%), Postives = 139/225 (61.78%), Query Frame = 1
Query:  112 RTAHNMSSSSLRKKSDLTLVSKIRFPCLRRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTGGGLLNATCGNATELIIAIFALYGRKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSD---ITAKATLQLSRASSIVMLIGYFAYLVFQL 777
            RTAHN+SSSSLRK SD +L+ K+    LR  LAN+ +V+L T+L +LFPA+ LAI      F + WVF LSL+GL PLAER+SFLTEQIAFYTGPT GGLLNAT GN TE+IIA+ AL   KI+VVK                   F  GIANLR  Q YD KQA VN+                +YA  S D   ++  A L LSRA SI+MLI Y AYL FQL
Sbjct:   31 RTAHNLSSSSLRKSSDASLLHKVPCAALRSLLANLNDVLLTTRLFLLFPAVLLAIAATYLHFGQVWVFVLSLIGLVPLAERLSFLTEQIAFYTGPTVGGLLNATFGNVTEVIIALLALREGKIEVVKCSLLGSILSNLLLVLGTSLFLAGIANLRAHQPYDTKQAHVNTALLMLAVLCHSLPLMLRYAVTSGDHAIVSGDAALHLSRACSILMLIAYLAYLFFQL 255          
BLAST of CK935460 vs. ExPASy Swiss-Prot
Match: CAX1C_ORYSJ (Vacuolar cation/proton exchanger 1c OS=Oryza sativa subsp. japonica GN=CAX1c PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.945e-40
Identity = 101/256 (39.45%), Postives = 144/256 (56.25%), Query Frame = 1
Query:   46 STEPWLMENGIVKV-------LSKEIRHGRTAHNMSSSSLRKKSDLTLVSKIRFPCLRRCL----ANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTGGGLLNATCGNATELIIAIFALYGRKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSD-ITAKATLQLSRASSIVMLIGYFAYLVFQL 777
            S+   L+E+G+++V       ++ E    + A   + SS    +   + S+   P LRR L    A +QEV+LGTKL  LF A+PLA+  +       WVFA SL+GL PLAERVSFL+E IA   GPT GG++NATCGN  ELIIA+FAL+  K++++K+                    GGI N+ KE+  D++QADV+                 KY +++ D I + + +QLSR+ +IVMLI YF  L+FQL
Sbjct:    6 SSHHHLLESGLLEVSKAPSAAVAAEEEEKKEAAAWTPSSSSSMTGRKIKSEAS-PLLRRLLGGPAAQLQEVLLGTKLYPLFSAVPLAVAAESLRLGRVWVFAFSLIGLAPLAERVSFLSEHIANTVGPTAGGIMNATCGNVPELIIALFALHKNKMEILKWSLLGSILSNLLLVLGSSLLFGGIVNIGKERPLDKRQADVSIGLLLLGVLCHIATLVSKYTSSTGDSINSSSVMQLSRSCAIVMLIAYFGSLMFQL 260          
BLAST of CK935460 vs. ExPASy Swiss-Prot
Match: CAX2_ARATH (Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 3.346e-30
Identity = 84/192 (43.75%), Postives = 108/192 (56.25%), Query Frame = 1
Query:  205 LANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTGGGLLNATCGNATELIIAIFALYGRKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITA-KATLQLSRASSIVMLIGYFAYLVFQL 777
            L +I+ VI   KL++L P  PLAI+      ++ WVF L+L+G+TPLAER+ + TEQ+A YTGPT GGLLNAT GN TELII+IFAL    I VV+                   FCGG+   +K+Q +D+  A VNS                 Y    S++ A  + L LSR SS +MLI Y AYL FQL
Sbjct:   65 LNSIKIVIFCNKLNLLLPFGPLAILVHYMIDSKGWVFLLTLVGITPLAERLGYATEQLACYTGPTVGGLLNATFGNVTELIISIFALKNGMIRVVQLTLLGSILSNMLLVLGCAFFCGGLVFYQKDQVFDKGIATVNSGLLLMAVMGILFPAVLHY--THSEVHAGSSELALSRFSSCIMLIAYAAYLFFQL 254          
BLAST of CK935460 vs. ExPASy Swiss-Prot
Match: CAX5_ARATH (Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.707e-30
Identity = 83/192 (43.23%), Postives = 106/192 (55.21%), Query Frame = 1
Query:  205 LANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTGGGLLNATCGNATELIIAIFALYGRKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITA-KATLQLSRASSIVMLIGYFAYLVFQL 777
            L + + VIL  KL++L P  PLAI+       + W+F LSL+G+TPLAER+ + TEQ+A YTG T GGLLNAT GN TELII+IFAL    I VV+                   FCGG+   +KEQ +D+  A VNS                 Y    S++ A  + L LSR SS +ML+ Y AYL FQL
Sbjct:   65 LQSFKIVILSNKLNLLLPFGPLAILLHYLTDNKGWIFLLSLVGITPLAERLGYATEQLACYTGSTVGGLLNATFGNVTELIISIFALKSGMIRVVQLTLLGSILSNMLLVLGCAFFCGGLVFSQKEQVFDKGNAVVNSGLLLMAVMGLLFPAVLHY--THSEVHAGSSELALSRFSSCIMLVAYAAYLFFQL 254          
BLAST of CK935460 vs. ExPASy Swiss-Prot
Match: CAX2_ORYSJ (Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=CAX2 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 3.132e-28
Identity = 75/195 (38.46%), Postives = 107/195 (54.87%), Query Frame = 1
Query:  196 RRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFA-EPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTGGGLLNATCGNATELIIAIFALYGRKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITAKATLQLSRASSIVMLIGYFAYLVFQL 777
            RR L +++ VIL  K++VL P  PLA++        + WVF  SL+G+TPLAER+ + TEQ+A YTGPT GGLLNAT GNATE+II+++AL    I VV+                   F GG+ +  ++Q +++  A VNS                 +  +      K+ + LSR SS +ML+ Y +YL FQL
Sbjct:   58 RRALTSVRVVILQAKINVLLPFGPLAVMLHYLSANHQGWVFLFSLIGITPLAERLGYATEQLALYTGPTIGGLLNATFGNATEMIISLYALKNGMIRVVQQSLLGSILSNMLLVLGCAFFAGGLVHPSRDQVFNKASAVVNSGLLLMAVLGLMFPAVLHFTHSEVQY-GKSEVSLSRFSSCIMLVAYASYLFFQL 251          
BLAST of CK935460 vs. ExPASy Swiss-Prot
Match: CAX6_ARATH (Putative vacuolar cation/proton exchanger 6 OS=Arabidopsis thaliana GN=CAX6 PE=3 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 5.000e-26
Identity = 76/186 (40.86%), Postives = 99/186 (53.23%), Query Frame = 1
Query:  223 VILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTGGGLLNATCGNATELIIAIFALYGRKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITA-KATLQLSRASSIVMLIGYFAYLVFQL 777
            VIL  KL++L P  PLAI+       + W F LSL+G+TPLAER+ + TEQ++ YTG T GGLLNAT GN  ELII+I AL    I VV+                   FCGG+    K+Q +D++ A V+S                 Y    S++ A  + L LSR  S +ML+ Y AYL FQL
Sbjct:   82 VILSNKLNLLLPFGPLAILVHYLTDNKGWFFLLSLVGITPLAERLGYATEQLSCYTGATVGGLLNATFGNVIELIISIIALKNGMIRVVQLTLLGSILSNILLVLGCAFFCGGLVFPGKDQVFDKRNAVVSSGMLLMAVMGLLFPTFLHY--THSEVHAGSSELALSRFISCIMLVAYAAYLFFQL 265          
The following BLAST results are available for this feature:
BLAST of CK935460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CAX3_ARATH1.257e-6957.94Vacuolar cation/proton exchanger 3 OS=Arabidopsis ... [more]
CAX1_ARATH6.237e-6957.54Vacuolar cation/proton exchanger 1 OS=Arabidopsis ... [more]
CAX1A_ORYSJ3.665e-6158.44Vacuolar cation/proton exchanger 1a OS=Oryza sativ... [more]
CAX4_ARATH1.263e-5349.55Vacuolar cation/proton exchanger 4 OS=Arabidopsis ... [more]
CAX1B_ORYSJ2.381e-5252.44Vacuolar cation/proton exchanger 1b OS=Oryza sativ... [more]
CAX1C_ORYSJ7.945e-4039.45Vacuolar cation/proton exchanger 1c OS=Oryza sativ... [more]
CAX2_ARATH3.346e-3043.75Vacuolar cation/proton exchanger 2 OS=Arabidopsis ... [more]
CAX5_ARATH5.707e-3043.23Vacuolar cation/proton exchanger 5 OS=Arabidopsis ... [more]
CAX2_ORYSJ3.132e-2838.46Vacuolar cation/proton exchanger 2 OS=Oryza sativa... [more]
CAX6_ARATH5.000e-2640.86Putative vacuolar cation/proton exchanger 6 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004555_E02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935460 ID=CK935460; Name=CK935460; organism=Citrus sinensis; type=EST; length=780bp
TTTTTTTTTTTTTTTTCTTTCAATTGCATTTGCGAAAAAATGGCTTCGAC
TGAACCATGGCTGATGGAGAATGGCATCGTGAAGGTTTTGAGCAAGGAGA
TCAGACATGGAAGAACTGCACACAACATGTCATCCTCCTCGTTGAGGAAA
AAATCCGATCTTACCCTTGTCTCGAAAATTCGATTCCCTTGTCTTAGACG
GTGTCTGGCTAATATCCAGGAGGTCATTTTGGGGACTAAACTTTCAGTTC
TCTTTCCCGCCATTCCTTTAGCCATAATCGGCCAGTGTTTTGGATTTGCA
GAACCATGGGTATTCGCTCTGAGCTTACTCGGACTGACTCCTCTGGCTGA
ACGTGTCAGCTTCTTGACAGAGCAAATTGCTTTCTACACTGGCCCAACAG
GGGGGGGATTATTGAACGCGACATGCGGCAATGCCACGGAGCTTATCATA
GCAATTTTCGCCCTATACGGACGTAAAATTGACGTGGTCAAATATTCTCT
TTTGGGTTCCATTCTCTCAAACCTTCTTCTGGTTCTTGGCACTTCGCTCT
TCTGTGGAGGCATTGCCAATCTCAGAAAGGAACAAAAATACGATAGAAAA
CAAGCCGATGTCAACTCGCTGCTGCTGCTGCTGGCATTGCTGTGCCACAT
GCTACCATTGCTATTCAAATACGCTGCGGCCTCCTCTGATATTACTGCCA
AGGCGACCCTTCAGCTATCAAGAGCCAGCAGCATTGTAATGCTGATTGGT
TACTTCGCCTATCTCGTCTTCCAATTGTGG
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