CK935461

Overview
NameCK935461
Unique NameCK935461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6283 contig Csv1_Contig6283:788..1309. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_WHEAT (Photosystem II reaction center protein I OS=Triticum aestivum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2
Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_VITVI (Photosystem II reaction center protein I OS=Vitis vinifera GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2
Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_TOBAC (Photosystem II reaction center protein I OS=Nicotiana tabacum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2
Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_SPIOL (Photosystem II reaction center protein I OS=Spinacia oleracea GN=psbI PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2
Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_SOYBN (Photosystem II reaction center protein I OS=Glycine max GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2
Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_SORBI (Photosystem II reaction center protein I OS=Sorghum bicolor GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2
Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_SOLTU (Photosystem II reaction center protein I OS=Solanum tuberosum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2
Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_SOLLC (Photosystem II reaction center protein I OS=Solanum lycopersicum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2
Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_SOLBU (Photosystem II reaction center protein I OS=Solanum bulbocastanum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2
Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
BLAST of CK935461 vs. ExPASy Swiss-Prot
Match: PSBI_SINAL (Photosystem II reaction center protein I OS=Sinapis alba GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.288e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2
Query:  158 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 265
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36          
The following BLAST results are available for this feature:
BLAST of CK935461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PSBI_WHEAT1.288e-13100.00Photosystem II reaction center protein I OS=Tritic... [more]
PSBI_VITVI1.288e-13100.00Photosystem II reaction center protein I OS=Vitis ... [more]
PSBI_TOBAC1.288e-13100.00Photosystem II reaction center protein I OS=Nicoti... [more]
PSBI_SPIOL1.288e-13100.00Photosystem II reaction center protein I OS=Spinac... [more]
PSBI_SOYBN1.288e-13100.00Photosystem II reaction center protein I OS=Glycin... [more]
PSBI_SORBI1.288e-13100.00Photosystem II reaction center protein I OS=Sorghu... [more]
PSBI_SOLTU1.288e-13100.00Photosystem II reaction center protein I OS=Solanu... [more]
PSBI_SOLLC1.288e-13100.00Photosystem II reaction center protein I OS=Solanu... [more]
PSBI_SOLBU1.288e-13100.00Photosystem II reaction center protein I OS=Solanu... [more]
PSBI_SINAL1.288e-13100.00Photosystem II reaction center protein I OS=Sinapi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004555_D06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935461 ID=CK935461; Name=CK935461; organism=Citrus sinensis; type=EST; length=522bp
GGGTGTGAATTTAATTTATGAAAACGATTTTCTNNNTAGAGAATCAAATT
CTAAAAAGAACTTCATTTCTTGATGTCAAAATTGGATATGTAGTATAAAA
ATAGAGAATCTATTCTCTTTTTCCTTTTCCCCAAAAACCTGATTTGGAGA
TTGTGTAATGCTTACTCTCAAACTCTTTGTTTACACCGTAGTGATATTCT
TTGTTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTAAT
CCCGGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATA
AACGTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAA
AGTGTTCGCTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACG
GAAAGAGAGGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTA
GCAATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAATTGAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA
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