CK935488

Overview
NameCK935488
Unique NameCK935488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935488_ssr10 microsatellite CK935488_ssr10:10..21. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1978 contig Csv1_Contig1978:554..1226. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935488 vs. ExPASy Swiss-Prot
Match: SUI11_ARATH (Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana GN=At4g27130 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.267e-37
Identity = 75/113 (66.37%), Postives = 90/113 (79.65%), Query Frame = 3
Query:  129 MVDIDSQIPTSYDPFADIK-DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 464
            M ++DSQ+PT++DPFAD   +    G K YVH+RVQQRNG+K LTTVQGLK+++ Y KILKDLKKEFCCNG VV D  LG+VIQLQGD RKNV  FLV++ +V KD IKIHGF
Sbjct:    1 MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113          
BLAST of CK935488 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSJ (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.816e-37
Identity = 76/115 (66.09%), Postives = 89/115 (77.39%), Query Frame = 3
Query:  129 MVDIDSQIPTSYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 464
            M D+D QIPT++DPFA+        A G K YVH+R+QQRNG+K LTTVQGLK++F Y KILKDLKKEFCCNG VV D  LG+VIQLQGD RKNV  FLV++ IV K+ IKIHGF
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CK935488 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSI (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica GN=GOS2 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.816e-37
Identity = 76/115 (66.09%), Postives = 89/115 (77.39%), Query Frame = 3
Query:  129 MVDIDSQIPTSYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 464
            M D+D QIPT++DPFA+        A G K YVH+R+QQRNG+K LTTVQGLK++F Y KILKDLKKEFCCNG VV D  LG+VIQLQGD RKNV  FLV++ IV K+ IKIHGF
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CK935488 vs. ExPASy Swiss-Prot
Match: SUI1_MAIZE (Protein translation factor SUI1 homolog OS=Zea mays GN=TIF PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.816e-37
Identity = 76/115 (66.09%), Postives = 89/115 (77.39%), Query Frame = 3
Query:  129 MVDIDSQIPTSYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 464
            M D+D QIPT++DPFA+        A G K YVH+R+QQRNG+K LTTVQGLK++F Y KILKDLKKEFCCNG VV D  LG+VIQLQGD RKNV  FLV++ IV K+ IKIHGF
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYSKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CK935488 vs. ExPASy Swiss-Prot
Match: SUI12_ARATH (Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana GN=At1g54290 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.816e-37
Identity = 74/113 (65.49%), Postives = 89/113 (78.76%), Query Frame = 3
Query:  129 MVDIDSQIPTSYDPFADIK-DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 464
            M D++ Q+PT++DPFAD   +    G K YVH+RVQQRNG+K LTTVQGLK+++ Y KILKDLKKEFCCNG VV D  LG+VIQLQGD RKNV  FLV++ +V KD IKIHGF
Sbjct:    1 MSDLEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113          
BLAST of CK935488 vs. ExPASy Swiss-Prot
Match: SUI1_PIMBR (Protein translation factor SUI1 homolog OS=Pimpinella brachycarpa PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.290e-37
Identity = 76/113 (67.26%), Postives = 90/113 (79.65%), Query Frame = 3
Query:  129 MVDIDSQIPTSYDPFADIKDSLAPGD-KGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 464
            MVD D QIPTS+DPFA+ + + A G  K YVH+R+QQRNG+K LTTVQGLK++  Y KILKDLKK  CCNG VVNDK LGKVIQLQGD RKNV  F+V++ IV KD+IK+H F
Sbjct:    1 MVDSDIQIPTSFDPFAEAEITDATGSTKEYVHIRIQQRNGRKSLTTVQGLKKELSYDKILKDLKKALCCNGTVVNDKELGKVIQLQGDQRKNVSTFIVQAGIVKKDQIKVHNF 113          
BLAST of CK935488 vs. ExPASy Swiss-Prot
Match: SUI1_BRAOL (Protein translation factor SUI1 homolog OS=Brassica oleracea PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.290e-37
Identity = 74/113 (65.49%), Postives = 90/113 (79.65%), Query Frame = 3
Query:  129 MVDIDSQIPTSYDPFADIK-DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 464
            M ++DSQ+PT++DPFAD   +    G K YVH+RVQQRNG+K LTTVQGLK+++ Y KILKDLKKEFCCNG VV D  LG+VIQLQGD RKNV  FLV++ +V KD I+IHGF
Sbjct:    1 MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDDIQIHGF 113          
BLAST of CK935488 vs. ExPASy Swiss-Prot
Match: SUI1_SPOST (Protein translation factor SUI1 homolog OS=Sporobolus stapfianus PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.073e-36
Identity = 75/115 (65.22%), Postives = 89/115 (77.39%), Query Frame = 3
Query:  129 MVDIDSQIPTSYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 464
            M D+D QIPT++DPF++        A G K YVH+R+QQRNG+K LTTVQGLK++F Y KILKDLKKEFCCNG VV D  LG+VIQLQGD RKNV  FLV++ IV K+ IKIHGF
Sbjct:    1 MSDLDIQIPTAFDPFSEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CK935488 vs. ExPASy Swiss-Prot
Match: SUI1_SALBA (Protein translation factor SUI1 homolog OS=Salix bakko PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.077e-36
Identity = 74/113 (65.49%), Postives = 88/113 (77.88%), Query Frame = 3
Query:  129 MVDIDSQIPTSYDPFADIK-DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 464
            M + D+ IPT++DPFA+   +    G K YVH+RVQQRNG+K LTTVQGLK+D+ Y KILKDLKKEFCCNG VV D  LG+VIQLQGD RKNV  FLV++ IV K+ IKIHGF
Sbjct:    1 MSEFDNAIPTAFDPFAEANAEDSGAGTKDYVHVRVQQRNGRKSLTTVQGLKKDYSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSSFLVQAGIVKKENIKIHGF 113          
BLAST of CK935488 vs. ExPASy Swiss-Prot
Match: EIF1_PONAB (Eukaryotic translation initiation factor 1 OS=Pongo abelii GN=EIF1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.238e-25
Identity = 53/105 (50.48%), Postives = 74/105 (70.48%), Query Frame = 3
Query:  159 SYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 464
            S+DPFAD     D L  G + Y+H+R+QQRNG+K LTTVQG+ +D+  +K++K  KK+F CNG V+     G+VIQLQGD RKN+  FLV+  +   D++K+HGF
Sbjct:    9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
The following BLAST results are available for this feature:
BLAST of CK935488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUI11_ARATH1.267e-3766.37Protein translation factor SUI1 homolog 1 OS=Arabi... [more]
SUI1_ORYSJ4.816e-3766.09Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_ORYSI4.816e-3766.09Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_MAIZE4.816e-3766.09Protein translation factor SUI1 homolog OS=Zea may... [more]
SUI12_ARATH4.816e-3765.49Protein translation factor SUI1 homolog 2 OS=Arabi... [more]
SUI1_PIMBR6.290e-3767.26Protein translation factor SUI1 homolog OS=Pimpine... [more]
SUI1_BRAOL6.290e-3765.49Protein translation factor SUI1 homolog OS=Brassic... [more]
SUI1_SPOST1.073e-3665.22Protein translation factor SUI1 homolog OS=Sporobo... [more]
SUI1_SALBA4.077e-3665.49Protein translation factor SUI1 homolog OS=Salix b... [more]
EIF1_PONAB3.238e-2550.48Eukaryotic translation initiation factor 1 OS=Pong... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004555_B10 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935488 ID=CK935488; Name=CK935488; organism=Citrus sinensis; type=EST; length=673bp
GGGGATAATACAAACAAACAATTAGCTCTCGAAGTCTCTTTACTTCTCAC
ACTTTCATTTCAGTACTTTTGCACAGGAAACTTCTAAGCTGACCTTCGAA
GGTTTTAGGTCTTCTATAAGCAAAGTACATGGTTGACATAGACAGCCAGA
TTCCAACTTCCTATGATCCCTTTGCTGATATAAAGGACTCCCTTGCCCCA
GGTGACAAAGGGTACGTGCATCTCCGCGTACAGCAGAGGAATGGAAAGAA
GTGCTTAACAACTGTTCAAGGACTTAAAGAGGATTTTGGCTACCAGAAGA
TCCTCAAGGACCTCAAAAAGGAGTTCTGTTGTAACGGGAATGTTGTCAAT
GACAAAGTTCTCGGGAAGGTGATTCAGCTTCAAGGTGATCATCGGAAGAA
TGTTATGATCTTTCTCGTTAAGAGTAAGATTGTGGACAAGGATCGTATCA
AGATTCATGGTTTCTAAACAAATGTGGTGATTAATACATATGGTTATGGT
ATAATATATGTGGTCTTATGTGATCTGCAGAGCATATCTGTAGTCTGTTC
TTGTTGAGGTTTTCTGTATTTCTCTGGACTTGGATTTAAGATTTTCTGTT
CTCAAGTTATGGATAATGATAATAAAAGTTATGGATATTTTTATAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA
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