CK935489

Overview
NameCK935489
Unique NameCK935489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1822 contig Csv1_Contig1822:1..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK935489 vs. ExPASy Swiss-Prot
Match: PAO_ARATH (Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=PAO PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.957e-24
Identity = 67/228 (29.39%), Postives = 106/228 (46.49%), Query Frame = 1 
Query:  256 SSPQLPADAKIPRSACVRTYEVKESQGVVWVWMSQK-----TPPNPDKLPWFENFARPGFQDVSTIHELPYDHSILLENLMDPAHIPISHDRTDYSAKREDAQPLGFEVTERTDRGFAGQWGREKDGSMPNFLRFEAPCVLQNNRESVDNKTGEKHYSTGLFLCR---PTGQGKSMLIV-------RFGTTGTSPWIKLFPDWYFHQSASKVFEQDMGFLSLQNEVLL 894
            S P+  A  K PR AC   +    SQG+++VW  +          P +LP  ++F +P F  V+   +L Y +  L+EN+ DP+HI  +H +   + +R+ A+PL F+V      GF G      D S     +F APC   N  E         +    +++C    P   GK+  IV       +F   G + W ++ P WY H +++ V++ DM  L  Q +V L
Sbjct:  172 SGPEARA-VKSPR-ACAIKFPTMVSQGLLFVWPDENGWDRANSIEPPRLP--DDFDKPEFSTVTIQRDLFYGYDTLMENVSDPSHIDFAHHKV--TGRRDRAKPLPFKVESSGPWGFQG----ANDDSPRITAKFVAPCYSMNKIELDAKLPIVGNQKWVIWICSFNIPMAPGKTRSIVCSARNFFQFSVPGPA-WWQVVPRWYEHWTSNLVYDGDMIVLQGQEKVFL 388

HSP 2 Score: 48.9062 bits (115), Expect = 5.957e-24
Identity = 22/37 (59.46%), Postives = 27/37 (72.97%), Query Frame = 3 
Query:   63 YRLAKLSEGQLID-GRLECLYHGWQFEGEGKCVKIPQ 170
            +RLA LSEG+L + G L+C YHGW F G G C +IPQ
Sbjct:  132 HRLAPLSEGRLDENGHLQCSYHGWSFGGCGSCTRIPQ 168
The following BLAST results are available for this feature:
BLAST of CK935489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PAO_ARATH5.957e-2429.39Pheophorbide a oxygenase, chloroplastic OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004555_A05 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935489 ID=CK935489; Name=CK935489; organism=Citrus sinensis; type=EST; length=895bp
GGGAGAGCTTTGGCATTGCAAATCTTTAATTGATGACCTACATTTTTAAC
TACCCCACTTGATATAGGTTAGCAAAACTCTCTGAGGGCCAACTGATTGA
CGGTAGGCTTGAATGTTTGTATCACGGCTGGCAGTTCGAAGGCGAGGGTA
AATGTGTTAAGATACCTCAGGTTCGGCTTTGTTTACCTTCTTCCTAGTTT
CTTTCTTAAGAATTGTCCTGAACTTACATATTATGAATGACAACGCTGAT
GAATTTCTTCACCTCAGCTTCCAGCTGATGCTAAAATTCCTCGATCGGCT
TGTGTTAGAACGTATGAGGTGAAGGAATCCCAAGGTGTTGTATGGGTTTG
GATGTCACAAAAGACACCGCCTAACCCTGATAAGCTTCCATGGTTTGAGA
ACTTTGCCAGGCCAGGGTTTCAAGATGTCTCAACAATCCATGAACTTCCA
TATGATCACTCCATACTCCTTGAGAACCTCATGGATCCCGCCCATATCCC
AATCTCACACGATAGGACCGACTATTCTGCTAAAAGAGAAGATGCCCAAC
CCCTTGGCTTTGAGGTGACTGAACGTACAGATCGAGGATTTGCAGGCCAA
TGGGGTAGGGAGAAAGATGGGTCAATGCCAAACTTTTTACGCTTCGAAGC
ACCATGCGTTCTCCAAAACAACAGAGAATCAGTTGACAATAAGACGGGAG
AAAAACACTACTCCACGGGTCTATTCCTCTGCAGACCAACCGGACAAGGG
AAATCAATGCTTATTGTGCGGTTTGGAACAACTGGAACATCTCCCTGGAT
CAAGTTGTTCCCTGATTGGTACTTCCATCAGAGTGCAAGCAAGGTTTTTG
AGCAAGATATGGGGTTCCTCTCCCTCCAAAATGAGGTCTTATTGA
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