CK935497

Overview
NameCK935497
Unique NameCK935497
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935497_ssr605 microsatellite CK935497_ssr605:605..614. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK935497 vs. ExPASy Swiss-Prot
Match: CT043_CHICK (UPF0549 protein C20orf43 homolog OS=Gallus gallus GN=RCJMB04_16p11 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.563e-16
Identity = 48/122 (39.34%), Postives = 73/122 (59.84%), Query Frame = 3
Query:  285 VDPAFQKSPNLPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERM 617
            +D +  K+P   +  S+IK LK++  + L+  P   G +E+  G         RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I++NGN+E++ VL++RM
Sbjct:   67 LDKSADKTPM--EAASHIKSLKNVTELNLADNPAWSGDKESKKGDTYDDIQSARFICPVVGLEMNGRHRFCFLRNCGCVFSERALKEIKTEVCHKCGVPFQEEDVIILNGNKEDVEVLKKRM 186          
BLAST of CK935497 vs. ExPASy Swiss-Prot
Match: CT043_PONAB (UPF0549 protein C20orf43 homolog OS=Pongo abelii PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.959e-16
Identity = 47/112 (41.96%), Postives = 66/112 (58.93%), Query Frame = 3
Query:  315 LPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERM 617
            L K  S+IK +K++  +KLS  P   G + N  G         RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I++NG +E++ VL+ RM
Sbjct:   75 LGKAASHIKSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTKEDVDVLKTRM 186          
BLAST of CK935497 vs. ExPASy Swiss-Prot
Match: CT043_HUMAN (UPF0549 protein C20orf43 OS=Homo sapiens GN=C20orf43 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 5.959e-16
Identity = 47/112 (41.96%), Postives = 66/112 (58.93%), Query Frame = 3
Query:  315 LPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERM 617
            L K  S+IK +K++  +KLS  P   G + N  G         RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I++NG +E++ VL+ RM
Sbjct:   75 LGKAASHIKSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTKEDVDVLKTRM 186          
BLAST of CK935497 vs. ExPASy Swiss-Prot
Match: CT043_MACFA (UPF0549 protein C20orf43 homolog OS=Macaca fascicularis GN=QccE-12445 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.783e-16
Identity = 47/112 (41.96%), Postives = 65/112 (58.04%), Query Frame = 3
Query:  315 LPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERM 617
            L K  S+IK +K++  +KLS  P   G + N  G         RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I++NG  E++ VL+ RM
Sbjct:   75 LGKAASHIKSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTNEDVDVLKARM 186          
BLAST of CK935497 vs. ExPASy Swiss-Prot
Match: CT043_RAT (UPF0549 protein C20orf43 homolog OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.264e-15
Identity = 45/112 (40.18%), Postives = 66/112 (58.93%), Query Frame = 3
Query:  315 LPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERM 617
            L K  S+I+ +K++  +KLS  P   G + N  G         RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I++NG +E++ +L+ RM
Sbjct:   75 LGKATSHIRSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEEDIIVLNGTKEDVEMLKRRM 186          
BLAST of CK935497 vs. ExPASy Swiss-Prot
Match: CT043_BOVIN (UPF0549 protein C20orf43 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.957e-15
Identity = 45/112 (40.18%), Postives = 66/112 (58.93%), Query Frame = 3
Query:  315 LPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERM 617
            L K  S+IK +K++  ++LS  P   G + N  G         RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I++NG +E++ VL+ R+
Sbjct:   75 LGKAASHIKSIKNVTELRLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTKEDVEVLKSRI 186          
BLAST of CK935497 vs. ExPASy Swiss-Prot
Match: CT043_PIG (UPF0549 protein C20orf43 homolog OS=Sus scrofa PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.862e-15
Identity = 45/112 (40.18%), Postives = 67/112 (59.82%), Query Frame = 3
Query:  315 LPKQYSYIKGLKDLINVKLSRVPGAEEN-----GDG------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERM 617
            L K  S+IK +K++  ++LS  P  E +     GD        RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I++NG +E++++L+ RM
Sbjct:   75 LGKAASHIKSIKNVTELRLSDNPAWEGDKGSTKGDKHDDLQRARFICPVVGLEMNGRHRFCYLRCCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTKEDVAMLQTRM 186          
BLAST of CK935497 vs. ExPASy Swiss-Prot
Match: CT043_MOUSE (UPF0549 protein C20orf43 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.862e-15
Identity = 44/112 (39.29%), Postives = 67/112 (59.82%), Query Frame = 3
Query:  315 LPKQYSYIKGLKDLINVKLSRVP---GAEENGDG--------IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERM 617
            L K  S+I+ +K++  ++LS  P   G + N  G         RF CP+ GLE NG++RF  +R CG V S +ALKE+K+  C  C   F E D I++NG +E++ +L++RM
Sbjct:   75 LGKAASHIRSIKNVTELRLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCCGCVFSERALKEIKAEVCHTCGAAFQEEDIIVLNGTKEDVEMLKKRM 186          
The following BLAST results are available for this feature:
BLAST of CK935497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CT043_CHICK4.563e-1639.34UPF0549 protein C20orf43 homolog OS=Gallus gallus ... [more]
CT043_PONAB5.959e-1641.96UPF0549 protein C20orf43 homolog OS=Pongo abelii P... [more]
CT043_HUMAN5.959e-1641.96UPF0549 protein C20orf43 OS=Homo sapiens GN=C20orf... [more]
CT043_MACFA7.783e-1641.96UPF0549 protein C20orf43 homolog OS=Macaca fascicu... [more]
CT043_RAT2.264e-1540.18UPF0549 protein C20orf43 homolog OS=Rattus norvegi... [more]
CT043_BOVIN2.957e-1540.18UPF0549 protein C20orf43 homolog OS=Bos taurus PE=... [more]
CT043_PIG3.862e-1540.18UPF0549 protein C20orf43 homolog OS=Sus scrofa PE=... [more]
CT043_MOUSE3.862e-1539.29UPF0549 protein C20orf43 homolog OS=Mus musculus P... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004554_H07 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935497 ID=CK935497; Name=CK935497; organism=Citrus sinensis; type=EST; length=905bp
GGGATTGGTATCGATCTCGTCTTCATATCTTAAAGTCTTAAATTTCCTCG
GAAGGATTAATATTCCCTCAAATTTTAAGCCGATCTATTCTAAATTCAAC
AATCCCAAAACAGAATGCGTTCCAAAACCCAAATTTTCATCAAATCCCCA
TCAAATTCTCTGAAAACCCTAACCGTAGGCGCAAACCAATTCGAAACGCT
AAACCACCTCAAACGCTCTCTCCTTTCACTGGACCAGTCTCTCTCGTCTC
TTTATTTCACTCTCAATGGAAAAATCCTCGACGAGTCGACCCCGCTTTTC
AAAAATCCCCAAATTTGCCTAAGCAGTATAGTTATATAAAGGGTTTGAAG
GATTTGATCAATGTGAAGCTTTCGAGGGTCCCTGGAGCAGAAGAGAATGG
TGATGGTATTAGGTTTCAGTGCCCGATAACAGGACTAGAGTTTAATGGGA
AGTATAGGTTTGTAGCAATGAGAACTTGTGGGCATGTGTTGAGTACTAAA
GCACTGAAAGAGGTGAAATCATCCTCATGTTTGGTTTGCCATGAGGAGTT
TGGGGAAATGGATAAGATTCTGATTAATGGGAATGAAGAAGAGATCTCGG
TGTTGAGAGAGAGAATGGAAGAAGAGAAGTTGAAAGTTAAGGAAAAGAAG
GTGAAGAAAGTGAAGAATGGTGAAGACTGTGTGGATGAAGATGTGGCTGT
GCATTCGTTGAGAGTTAGTGGGGCTAAGCGTGGGGCTGTTGAAAACAAGA
GTGGGGAGAAGGCTTTGGCCAAAGTGGACGTGAATGGGAAGGTAGGGAAT
GTGAACGGTGCAAGTGGTAATCCCGCGGTGAAGCGTTTNCAGGCAGCTGA
TATGGCTCCACCTAATGCTANNNNANCAGTGTATGCATCAATCTTTACTT
CGTCA
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