CK935528

Overview
NameCK935528
Unique NameCK935528
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935528_ssr43 microsatellite CK935528_ssr43:43..54. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8493 contig Csv1_Contig8493:84..908. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935528 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 388.652 bits (997), Expect = 2.188e-107
Identity = 190/240 (79.17%), Postives = 206/240 (85.83%), Query Frame = 1
Query:  106 IGVKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFXXXXXXXXXXXXXXXXXXXNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 825
            +GV EMLG PLN  +  R+SAP AS+PSTFK VALF                   ++ELAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE+VL+GGAEYYRITNGLD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNGRLAMFAMLGFF
Sbjct:    4 LGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSET---SDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFF 240          
BLAST of CK935528 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 9.670e-47
Identity = 99/187 (52.94%), Postives = 122/187 (65.24%), Query Frame = 1
Query:  286 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNG----LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 825
            ++YGPDR  FL  G    ++ PEYLTGE PGDYG+D  GLS  P  F++Y+  ELIHARWA+LGA G + PE  +++      E VWFK GA +     LNY G    I   +++  +  ++VL+G AE YR   G    LD  D L+PGGPFDPLGLA DPD FA LKVKEIKNGRLAMF+ LGFF
Sbjct:   32 EFYGPDRAKFL--GPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFF 216          
BLAST of CK935528 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.307e-43
Identity = 94/184 (51.09%), Postives = 120/184 (65.22%), Query Frame = 1
Query:  289 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 825
            WYGPDR ++L        E P YLTGE PGDYG+D  GLS  P++F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK GA +     L+Y G    +    + A+ A +++L+G  E YRI  G   ++ D ++PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF
Sbjct:   58 WYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFF 237          
BLAST of CK935528 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.707e-43
Identity = 95/184 (51.63%), Postives = 120/184 (65.22%), Query Frame = 1
Query:  289 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 825
            WYGPDR ++L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK GA +     L+Y G  + I    + A+ A +++L+G  E YR+  G   ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF
Sbjct:   62 WYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFF 241          
BLAST of CK935528 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.803e-43
Identity = 95/184 (51.63%), Postives = 118/184 (64.13%), Query Frame = 1
Query:  289 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 825
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE F + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YR+  G   ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF
Sbjct:   50 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 229          
BLAST of CK935528 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.967e-43
Identity = 94/184 (51.09%), Postives = 119/184 (64.67%), Query Frame = 1
Query:  289 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 825
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ FSK +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YRI  G   ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF
Sbjct:   52 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFF 231          
BLAST of CK935528 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.967e-43
Identity = 94/184 (51.09%), Postives = 119/184 (64.67%), Query Frame = 1
Query:  289 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 825
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ FSK +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YRI  G   ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF
Sbjct:   53 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFF 232          
BLAST of CK935528 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.487e-43
Identity = 94/184 (51.09%), Postives = 120/184 (65.22%), Query Frame = 1
Query:  289 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 825
            WYGPDR ++L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK GA +     L+Y G  + I    + A+ A +++L+G  E YR+  G   ++ D ++PGG FDPLGLA DPD FA +KVKEIKNGRLAMF+M GFF
Sbjct:   62 WYGPDRVMYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFF 241          
BLAST of CK935528 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.487e-43
Identity = 95/184 (51.63%), Postives = 118/184 (64.13%), Query Frame = 1
Query:  289 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 825
            WYGPDR  +L        E P YLTGE P DYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE F + G   G EAVWFK GA +     L+Y G    +    + A+ A ++VL+G  E YR+  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFF 230          
BLAST of CK935528 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 6.487e-43
Identity = 97/184 (52.72%), Postives = 118/184 (64.13%), Query Frame = 1
Query:  289 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 825
            WYGPDR  +L        +IP YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+G  E YR+  G   E  D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF
Sbjct:   49 WYGPDRPKYLGPF---SDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFF 228          
The following BLAST results are available for this feature:
BLAST of CK935528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB26_ARATH2.188e-10779.17Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB2_DUNTE9.670e-4752.94Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2B_PINSY1.307e-4351.09Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_PINSY1.707e-4351.63Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB24_PETSP3.803e-4351.63Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB28_PEA4.967e-4351.09Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_PEA4.967e-4351.09Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB2A_PYRPY6.487e-4351.09Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB23_PETSP6.487e-4351.63Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_GOSHI6.487e-4352.72Chlorophyll a-b binding protein 151, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_F11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935528 ID=CK935528; Name=CK935528; organism=Citrus sinensis; type=EST; length=825bp
GGGGACTCTCATCTTCACCATTTCATTTCTCTAACACAAAGAAGCAGCAG
CAGCAACACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTG
CCTCCATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGT
GCTGTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCC
CGTTGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGC
CCGTCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCT
GACCGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCC
TGAGTACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTTTG
GTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATATGAATTG
ATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGA
AGCCTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCA
AGACTGGAGCTCTACTTCTTGATGGAAACACATTGAACTACTTCGGAAAG
AACATCCCAATCAACCTTGTTTTTGCTGTCATTGCTGAGATTGTTCTTGT
AGGTGGTGCTGAATATTATAGAATCACCAACGGTTTGGATTTGGAGGACA
AGCTTCACCCAGGTGGTCCATTTGACCCACTGGGATTAGCAAAGGATCCT
GACCAATTTGCATTGCTAAAAGTGAAGGAGATCAAGAATGGAAGACTTGC
AATGTTTGCCATGCTTGGTTTCTTT
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