CK935531

Overview
NameCK935531
Unique NameCK935531
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935531 vs. ExPASy Swiss-Prot
Match: RPS2_ARATH (Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.760e-12
Identity = 79/284 (27.82%), Postives = 123/284 (43.31%), Query Frame = 3
Query:   72 YEAIKLSYDKLVGEELKHIFLLIGY------TDIASIDDXXXXXXXXXXFQGVNKIEVARNRVHTLVRTLKASCMLLDHISQKKELFSMHDVVRDVAISIASTERNVFTATN--EQVDGCREWSDGSAIKHCTSIVLHDIKTNLLPKVLECPQLELLFLSSDDPWESSPATIPDNFFKSMIEVRVVNLTDMILPXXXXXXXXXXXXXXCYCSLPDLSV-VGDLKKLEILCLRGSTIKKLPVEVGELTWLKLLDLRDCEELEVIPPNVLSKLSHLEELYIGQSFA 896
            +  +K SYD L  + L+  FL           +I  + +            GVN I     + + L+  LKA+C+L      +K    MH+VVR  A+ +AS E+  +      E   G  E       +    I L D +   LP+ L CP+L  L L  +    SS   IP  FF  M  +RV++L+                    + S+ ++ + +  L +L  L + G+ I  LP E+G L  LK LDL+  + L+ IP + +  LS LE L +  S+A
Sbjct:  389 FALLKFSYDNLESDLLRSCFLYCALFPEEHSIEIEQLVEYWVGEGFLTSSHGVNTIY----KGYFLIGDLKAACLL--ETGDEKTQVKMHNVVRSFALWMAS-EQGTYKELILVEPSMGHTEAPKAENWRQALVISLLDNRIQTLPEKLICPKLTTLMLQQN----SSLKKIPTGFFMHMPVLRVLDLS--------------------FTSITEIPLSIKYLVELYHLSMSGTKISVLPQELGNLRKLKHLDLQRTQFLQTIPRDAICWLSKLEVLNLYYSYA 641          
BLAST of CK935531 vs. ExPASy Swiss-Prot
Match: DRL27_ARATH (Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.494e-11
Identity = 80/302 (26.49%), Postives = 131/302 (43.38%), Query Frame = 3
Query:    3 WKDALEKLGRXSSSNFKHVQPDAYEAIKLSYDKLVGEELKHIFLLIG-YTDIASID--DXXXXXXXXXXFQGVNKIEVARNRVHTLVRTLKASCMLLDHISQKKELFSMHDVVRDVAISIASTERNVFTATNEQVDGCREWSDGSAIKHCTSIVLHDIKTNLLPKVLE--CPQLELLFLSSDDPWESSPATIPDNFFKSMIEVRVVNLTDMILPXXXXXXXXXXXXXX------CYCSLPDLSVVGDLKKLEILCLRGSTIKKLPVEVGELTWLKLLDLRDCEELEVIPPNVLSKLSHLEEL 875
            W   L KL + S    K ++   ++ +KLSYD L  ++ K  FLL   + +  SI+  +           + +   E + N   T V +LK  C+L D    +++   MHDVVRD AI I S+ ++   +      G ++            + L + K   LP ++E  C +  +L L  +   +     +P  F ++   +R++NL+   +                     C+  L  L  +  L KLE+L L G+ I + P  + EL   + LDL     LE IP  V+S+LS LE L
Sbjct:  358 WNHVLSKLSK-SVPWIKSIEEKIFQPLKLSYDFLE-DKAKFCFLLCALFPEDYSIEVTEVVRYWMAEGFMEELGSQEDSMNEGITTVESLKDYCLLED--GDRRDTVKMHDVVRDFAIWIMSSSQDDSHSLVMSGTGLQDIRQDKLAPSLRRVSLMNNKLESLPDLVEEFCVKTSVLLLQGNFLLKE----VPIGFLQAFPTLRILNLSGTRIKSFPSCSLLRLFSLHSLFLRDCF-KLVKLPSLETLAKLELLDLCGTHILEFPRGLEELKRFRHLDLSRTLHLESIPARVVSRLSSLETL 650          
The following BLAST results are available for this feature:
BLAST of CK935531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RPS2_ARATH8.760e-1227.82Disease resistance protein RPS2 OS=Arabidopsis tha... [more]
DRL27_ARATH1.494e-1126.49Disease resistance protein At4g27190 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004554_E07 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935531 ID=CK935531; Name=CK935531; organism=Citrus sinensis; type=EST; length=898bp
GGTGGAAGGATGCATTGGAAAAACTAGGAAGGNNNTCTTCATCGAATTTT
AAGCATGTACAGCCAGATGCATATGAAGCCATAAAGTTGAGCTACGACAA
ATTGGTAGGGGAGGAGCTGAAGCACATCTTTTTGCTAATAGGATATACAG
ACATAGCATCTATTGATGACTTGTTAATGTGTGGTATGGGATTGGGTTTA
TTTCAAGGTGTGAATAAGATTGAAGTAGCACGAAATCGAGTACATACATT
GGTGCGCACACTCAAAGCTTCTTGTATGTTGCTTGACCATATAAGCCAGA
AGAAAGAGTTGTTTTCTATGCATGATGTAGTTCGCGATGTCGCCATATCA
ATTGCATCTACTGAACGAAATGTGTTTACTGCTACAAATGAGCAGGTTGA
TGGTTGCAGGGAATGGTCAGACGGAAGTGCAATAAAGCATTGCACTTCAA
TCGTCTTACATGATATCAAGACTAATTTGCTTCCTAAAGTACTGGAATGT
CCTCAGCTCGAACTTCTTTTTCTAAGTAGTGATGATCCTTGGGAATCTTC
ACCAGCAACAATTCCAGACAACTTTTTCAAGAGCATGATCGAGGTCAGAG
TTGTAAACTTGACTGACATGATACTGCCTTCATCACTTGGTCTCCTGTCA
AACCTTCGCACACTGAGTTTGTGTTACTGCAGCTTGCCTGATCTAAGTGT
TGTAGGAGACTTGAAGAAACTAGAAATCCTTTGCCTAAGAGGTTCTACAA
TTAAGAAGTTGCCGGTAGAAGTAGGTGAATTGACTTGGCTAAAGTTGCTT
GATTTGAGAGATTGTGAGGAACTAGAAGTTATTCCACCAAATGTTTTATC
AAAATTATCCCATTTAGAAGAACTATATATAGGTCAAAGCTTTGCTGA
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