CK935549

Overview
NameCK935549
Unique NameCK935549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1826 contig Csv1_Contig1826:1..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935549 vs. ExPASy Swiss-Prot
Match: NFYA1_ARATH (Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.651e-27
Identity = 89/248 (35.89%), Postives = 116/248 (46.77%), Query Frame = 2
Query:  161 MPAKPD-ENRQLDRGAQSVSQSAIYSQQPWWXXXXXXXXXXXXXXXXXXREQ----PNGSVVNGA-TYSQDG-INGQEHAHLKHIPSSTPLAMGER--LEQNSQM---------------ELVGHSIVLTSYPYTDPQHVGVITPYVPQVMIPPQLYGMHQARXXXXXXXXXXXVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKQL---NDNAANSAEKG 823
            M +KP  EN +      +V Q  +Y++ PWW                         PNGS  N   + S+DG +NG+     K   ++T     +   +E N                  ELVGH I     PY DP + G++  Y  Q +      GM + R           VYVNAKQY GILRRR++RAKAELE+KVI+ RKPYLHESRH+HAMRRAR  GGRF    ++    D      E+G
Sbjct:    1 MQSKPGRENEEEVNNHHAVQQPMMYAE-PWWKNNSFGVVPQARPSGIPSNSSSLDCPNGSESNDVHSASEDGALNGENDGTWKDSQAATSSRSVDNHGMEGNDPALSIRNMHDQPLVQPPELVGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYVNAKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRFAKKSEVEAGEDAGGRDRERG 247          
BLAST of CK935549 vs. ExPASy Swiss-Prot
Match: NFYA9_ARATH (Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.795e-25
Identity = 65/130 (50.00%), Postives = 83/130 (63.85%), Query Frame = 2
Query:  449 ELVGHSIV-LTSYPYTDPQHVGVITPYVPQVMIPPQLYGMHQARXXXXXXXXXXXVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKQLNDNAANSAEKGMNSG 835
            +LVGH++   +S PY DP + GV+  Y    +      GM  +R           V+VNAKQY+ ILRRRQ+RAKAELEKK+IK+RKPYLHESRHQHAMRR RG GGRF   K+ N  A+    +  ++G
Sbjct:  113 QLVGHTVGWASSNPYQDPYYAGVMGAYGHHPLGFVPYGGMPHSRMPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKLIKSRKPYLHESRHQHAMRRPRGTGGRF--AKKTNTEASKRKAEEKSNG 240          
BLAST of CK935549 vs. ExPASy Swiss-Prot
Match: NFYA7_ARATH (Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.062e-24
Identity = 59/121 (48.76%), Postives = 77/121 (63.64%), Query Frame = 2
Query:  461 HSIVLTSYPYTDPQHVGVITPYV-PQVMIPPQLYGMHQARXXXXXXXXXXXVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKQLNDNAANSAEK 820
            +S+    YPY DP +  +  P   P   +  QL G+ Q             V+VNAKQY GILRRRQSRA+ E + KVIK+RKPYLHESRH HA+RR RGCGGRFLN K+ +++  +S+ +
Sbjct:   51 NSMAPGQYPYPDPYYRSIFAPPPQPYTGVHLQLMGVQQQGVPLPSDAVEEPVFVNAKQYHGILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHEDSSHE 171          
BLAST of CK935549 vs. ExPASy Swiss-Prot
Match: NFYA4_ARATH (Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana GN=NFYA4 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.990e-24
Identity = 69/162 (42.59%), Postives = 86/162 (53.09%), Query Frame = 2
Query:  362 NGQEHAHLKHIPSSTPLAM-----GERLEQNS-QMELVGHSIVLTSYPYTDPQHVGVITP--YVPQVM--IPPQLYGMHQARXXXXXXXXXXXVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKQLNDNAANSAE 817
            N + HA  +   S T   +      E ++ NS   E + H +    YPY DP +  V     Y+P     +  QL GM Q             V+VNAKQY GILRRRQSRAK E   + IKA+KPY+HESRH HA+RR RGCGGRFLN K+ N +     E
Sbjct:   11 NNESHAKKERPDSQTRPQVPSGRSSESIDTNSVYSEPMAHGL----YPYPDPYYRSVFAQQAYLPHPYPGVQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQSRAKLEARNRAIKAKKPYMHESRHLHAIRRPRGCGGRFLNAKKENGDHKEEEE 168          
BLAST of CK935549 vs. ExPASy Swiss-Prot
Match: NFYA3_ARATH (Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.874e-21
Identity = 56/117 (47.86%), Postives = 73/117 (62.39%), Query Frame = 2
Query:  479 SYPYTDPQHVGVITP-YVPQV-MIPPQLYGMHQARXXXXXXXXXXX-VYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKQLNDNAANSAEK 820
            S+ Y DP + G++   Y+PQ     PQ+  M   R            V+VNAKQY  I+RRRQ RAK E + K+I+ARKPYLHESRH HA++R RG GGRFLNTK+L   +  +A +
Sbjct:  134 SFHYADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKPYLHESRHVHALKRPRGSGGRFLNTKKLLQESEQAAAR 250          
BLAST of CK935549 vs. ExPASy Swiss-Prot
Match: NFYA2_ARATH (Nuclear transcription factor Y subunit A-2 OS=Arabidopsis thaliana GN=NFYA2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.454e-21
Identity = 59/128 (46.09%), Postives = 79/128 (61.72%), Query Frame = 2
Query:  470 VLTSYPYTDPQHVGVITPYVPQ--VMIPPQLYGMHQARXXXXXXXXXXXVYVNAKQYRGILRRRQSRAKAE--LEKKVI--KARKPYLHESRHQHAMRRARGCGGRFLNTKQLN-DNAANSAEKGMNS 832
            + T YPY + Q+ GV++ Y  Q  VM+P  +                  +YVN+KQY GI+RRRQSRAKA   L++K +  + RKPY+H SRH HA+RR RG GGRFLNTK  N +N+  +A+KG  S
Sbjct:  101 IYTKYPYGEQQYYGVVSAYGSQSRVMLPLNM------------ETEDSTIYVNSKQYHGIIRRRQSRAKAAAVLDQKKLSSRCRKPYMHHSRHLHALRRPRGSGGRFLNTKSQNLENSGTNAKKGDGS 216          
BLAST of CK935549 vs. ExPASy Swiss-Prot
Match: NFYA8_ARATH (Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana GN=NFYA8 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.072e-20
Identity = 56/110 (50.91%), Postives = 71/110 (64.55%), Query Frame = 2
Query:  479 SYPYTDPQHVGVITP--YVPQVMI-PPQLYGMHQARXXXXXXXXXXXVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKQLNDN 799
            S+ Y DP H G + P  Y+PQ  I  PQ+  +               V+VNAKQ+  I+RRRQ RAK E + K+IKARKPYLHESRH HA++R RG GGRFLNTK+L ++
Sbjct:  132 SFHYADP-HFGGLMPAAYLPQATIWNPQMTRV----PLPFDLIENEPVFVNAKQFHAIMRRRQQRAKLEAQNKLIKARKPYLHESRHVHALKRPRGSGGRFLNTKKLQES 236          
BLAST of CK935549 vs. ExPASy Swiss-Prot
Match: NFYA5_ARATH (Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana GN=NFYA5 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.875e-20
Identity = 45/75 (60.00%), Postives = 58/75 (77.33%), Query Frame = 2
Query:  611 VYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKQLNDNAANSAEKGMNSG 835
            ++VNAKQY  ILRRR+ RAK E + K+IK RKPYLHESRH HA++RARG GGRFLNTK+L +++ +     M +G
Sbjct:  180 IFVNAKQYHAILRRRKHRAKLEAQNKLIKCRKPYLHESRHLHALKRARGSGGRFLNTKKLQESSNSLCSSQMANG 254          
BLAST of CK935549 vs. ExPASy Swiss-Prot
Match: NFYA6_ARATH (Nuclear transcription factor Y subunit A-6 OS=Arabidopsis thaliana GN=NFYA6 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.940e-18
Identity = 48/91 (52.75%), Postives = 61/91 (67.03%), Query Frame = 2
Query:  521 PYVPQVMIP-PQLYGMHQARXXXXXXXXXXX-VYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKQ 787
            PY  Q  +  PQ+ G+  +R            ++VNAKQY+ ILRRR+ RAK E + K+IK RKPYLHESRH HA++R RG GGRFLNTK+
Sbjct:  141 PYASQHTVQHPQIRGLVPSRMPLPHNIPENEPIFVNAKQYQAILRRRERRAKLEAQNKLIKVRKPYLHESRHLHALKRVRGSGGRFLNTKK 231          
BLAST of CK935549 vs. ExPASy Swiss-Prot
Match: NFYAA_ARATH (Nuclear transcription factor Y subunit A-10 OS=Arabidopsis thaliana GN=NFYA10 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.644e-18
Identity = 53/111 (47.75%), Postives = 69/111 (62.16%), Query Frame = 2
Query:  467 IVLTSYPYTDPQHVGVITPYVPQ-----VMIPPQLYGMHQARXXXXXXXXXXXVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTK 784
            ++ T +P+ + Q+ GV++ Y  Q     VMIP ++                  +YVN+KQY GI+RRRQSRAKAE   K+ + RKPY+H SRH HAMRR RG GGRFLNTK
Sbjct:   95 MMYTKHPHVE-QYYGVVSAYGSQRSSGRVMIPLKMETEEDGT-----------IYVNSKQYHGIIRRRQSRAKAE---KLSRCRKPYMHHSRHLHAMRRPRGSGGRFLNTK 190          
The following BLAST results are available for this feature:
BLAST of CK935549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
NFYA1_ARATH6.651e-2735.89Nuclear transcription factor Y subunit A-1 OS=Arab... [more]
NFYA9_ARATH2.795e-2550.00Nuclear transcription factor Y subunit A-9 OS=Arab... [more]
NFYA7_ARATH1.062e-2448.76Nuclear transcription factor Y subunit A-7 OS=Arab... [more]
NFYA4_ARATH8.990e-2442.59Nuclear transcription factor Y subunit A-4 OS=Arab... [more]
NFYA3_ARATH1.874e-2147.86Nuclear transcription factor Y subunit A-3 OS=Arab... [more]
NFYA2_ARATH5.454e-2146.09Nuclear transcription factor Y subunit A-2 OS=Arab... [more]
NFYA8_ARATH2.072e-2050.91Nuclear transcription factor Y subunit A-8 OS=Arab... [more]
NFYA5_ARATH7.875e-2060.00Nuclear transcription factor Y subunit A-5 OS=Arab... [more]
NFYA6_ARATH1.940e-1852.75Nuclear transcription factor Y subunit A-6 OS=Arab... [more]
NFYAA_ARATH5.644e-1847.75Nuclear transcription factor Y subunit A-10 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_D02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935549 ID=CK935549; Name=CK935549; organism=Citrus sinensis; type=EST; length=843bp
GGGGACAGTATCTGTGTCTCTCTTAAGGTTGCAGAGAAATACAGACTAAA
CTAAAACGAATCAAAGTCGGTGACTTTCTTTTAGAATCTCTATGCTCTGC
TTCTCATCTCACAGTGCAGGATTAGGCTGTTTATACTATTAGAGGATTAG
GTTGTGAATGATGCCGGCAAAACCTGATGAAAATCGGCAGTTAGACCGTG
GTGCTCAGAGTGTCTCGCAATCAGCCATCTATTCCCAGCAGCCTTGGTGG
AGTGGGACAGGAACTGGTGCCTCCTTAGCTGAAGCAGCAGCTTCTAAATC
TTCAAGGGAACAACCAAATGGTTCTGTTGTAAATGGTGCCACCTATTCAC
AAGATGGGATTAATGGACAAGAACATGCGCATCTCAAACATATTCCATCC
TCAACACCTCTAGCTATGGGCGAACGCCTTGAACAAAATTCCCAAATGGA
GCTAGTTGGTCACTCAATTGTTTTGACATCATATCCATATACAGATCCAC
AACATGTTGGAGTAATTACCCCCTACGTGCCACAAGTTATGATTCCTCCT
CAGTTATATGGAATGCATCAAGCAAGAATGCCTTTGCCTCTCGAAATGGA
AGAGGAGCCTGTTTATGTGAATGCAAAACAGTATAGAGGTATTTTGAGAC
GAAGACAGTCGCGTGCTAAGGCTGAGCTTGAAAAGAAAGTGATTAAAGCG
AGAAAGCCTTATCTTCATGAGTCCAGACATCAACATGCAATGAGAAGGGC
TAGGGGTTGTGGAGGCCGTTTTCTCAATACTAAGCAGCTCAATGACAATG
CTGCAAACTCTGCAGAAAAAGGTATGAATTCTGGTGCAGACGG
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