CK935550

Overview
NameCK935550
Unique NameCK935550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935550_ssr5 microsatellite CK935550_ssr5:5..16. BLAST: Citrus ESTs to Prunus persica proteins V1
CK935550_ssr40 microsatellite CK935550_ssr40:40..49. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11725 contig Csv1_Contig11725:65..936. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935550 vs. ExPASy Swiss-Prot
Match: SMT2_ARATH (24-methylenesterol C-methyltransferase 2 OS=Arabidopsis thaliana GN=SMT2 PE=1 SV=2)

HSP 1 Score: 480.715 bits (1236), Expect = 4.556e-135
Identity = 225/266 (84.59%), Postives = 252/266 (94.74%), Query Frame = 3
Query:   72 MDSLVLFCTGALLAGGLYWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKRPKET-TKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYXEITE 866
            MDSL LF TGAL+A G+YWF+CVLGPAE+KGKRAV+LSGGSISAE+V+DNYK+YW FF+RPKE  T EKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSH+DATRLHEEMAVDLI VK G +ILDVGCGVGGPMRAIA+HSRANVVGITINEYQVNRARLHNKKAGLD+LCEVVCGNFL+MPF+DN FDGAYSIEATCHAPKLE+VYAE++RVLKPGS+YVSYEWVTT+K++AE+ EHV++IQGIERGDALPGLR+Y +I E
Sbjct:    1 MDSLTLFFTGALVAVGIYWFLCVLGPAERKGKRAVDLSGGSISAEKVQDNYKQYWSFFRRPKEIETAEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHKDATRLHEEMAVDLIQVKPGQKILDVGCGVGGPMRAIASHSRANVVGITINEYQVNRARLHNKKAGLDALCEVVCGNFLQMPFDDNSFDGAYSIEATCHAPKLEEVYAEIYRVLKPGSMYVSYEWVTTEKFKAEDDEHVEVIQGIERGDALPGLRAYVDIAE 266          
BLAST of CK935550 vs. ExPASy Swiss-Prot
Match: SMT3B_ARATH (24-methylenesterol C-methyltransferase 3 OS=Arabidopsis thaliana GN=SMT3 PE=2 SV=1)

HSP 1 Score: 451.825 bits (1161), Expect = 2.266e-126
Identity = 207/264 (78.41%), Postives = 239/264 (90.53%), Query Frame = 3
Query:   72 MDSLVLFCTGALLAGGLYWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKRPKET-TKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYXEI 860
            MDS+ L+CT  L+AG +YWF+CVLGPAE+KGKRA +LSGGSISAE+V+DNY +YW FF++PKE  + EKVPDFVDTFYNLVTDIYEWGWGQSFHFSP +PGKS +DATR+HEEMAVDLI VK G +ILD GCGVGGPMRAIAAHS+A V GITINEYQV RA+LHNKKAGLDSLC VVCGNFLKMPF++N FDGAYSIEATCHAPKLE+VY+E+FRV+KPGSL+VSYEWVTT+KY  +++EH D+IQGIERGDALPGLRSY +I
Sbjct:    1 MDSVALYCTAGLIAGAVYWFICVLGPAERKGKRASDLSGGSISAEKVKDNYNQYWSFFRKPKEIESAEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPHVPGKSDKDATRIHEEMAVDLIKVKPGQKILDAGCGVGGPMRAIAAHSKAQVTGITINEYQVQRAKLHNKKAGLDSLCNVVCGNFLKMPFDENTFDGAYSIEATCHAPKLEEVYSEIFRVMKPGSLFVSYEWVTTEKYRDDDEEHKDVIQGIERGDALPGLRSYADI 264          
BLAST of CK935550 vs. ExPASy Swiss-Prot
Match: SMT2_ORYSJ (24-methylenesterol C-methyltransferase 2 OS=Oryza sativa subsp. japonica GN=Smt2-1 PE=2 SV=2)

HSP 1 Score: 400.979 bits (1029), Expect = 4.588e-111
Identity = 190/255 (74.51%), Postives = 212/255 (83.14%), Query Frame = 3
Query:  120 LYWFVCVLGPAEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKRPKET-----TKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYXEITEI 869
            +YWFV V+G AE KGKRAV+L  GSI+ ++V+D Y +YW FF+RPKET     + EKVP FVDTFYNLVTDIYEWGWGQSFHFSPS+PG+SHR+ATR+HEE   DL+  K G R+LDVGCGVGGPMRAIAAHS +NVVGITINEYQVNRAR HN+KAGLDS CEVVCGNFL MPF D  FDGAYSIEATCHAP+L+DVY EVFRVLKPG LYVSYEWVTT  Y A+N EHV+ I GIERGDALPGLR   EI  I
Sbjct:   18 VYWFVWVMGAAEVKGKRAVDLKMGSITNDKVKDKYTQYWSFFRRPKETATTEASAEKVPAFVDTFYNLVTDIYEWGWGQSFHFSPSLPGRSHREATRVHEERVADLLQAKPGHRLLDVGCGVGGPMRAIAAHSGSNVVGITINEYQVNRARAHNRKAGLDSRCEVVCGNFLSMPFSDASFDGAYSIEATCHAPRLQDVYGEVFRVLKPGGLYVSYEWVTTSLYRADNPEHVEAIHGIERGDALPGLRRQDEIASI 272          
BLAST of CK935550 vs. ExPASy Swiss-Prot
Match: SMT1_ORYSJ (Cycloartenol-C-24-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Smt1-1 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 6.733e-54
Identity = 101/224 (45.09%), Postives = 139/224 (62.05%), Query Frame = 3
Query:  186 GGSISAEEVE---DNYKEYWKFFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRS 848
            GG I+ +EV+   D Y++Y  ++   +E  K    D V+ +Y+L T  YE+GWG+SFHF+    G+S R++ + HE      + VK G ++LDVGCG+GGP+R IA  S A+V G+  NEYQ+ R +  N+ AG+   C+ V  +F+KMPF DN FD  Y+IEATCHAP     Y E++RVLKPG  +  YEW  TD YE  N  H  I   IE G+ LP +RS
Sbjct:   14 GGKITKDEVKSAVDEYEKYHGYYGGKEEARKSNYTDMVNKYYDLATSFYEYGWGESFHFAHRWNGESLRESIKRHEHFLALQLGVKPGMKVLDVGCGIGGPLREIAKFSLASVTGLNNNEYQITRGKELNRVAGVSGTCDFVKADFMKMPFSDNTFDAVYAIEATCHAPDPVGCYKEIYRVLKPGQCFAVYEWCITDHYEPNNATHKRIKDEIELGNGLPDIRS 237          
BLAST of CK935550 vs. ExPASy Swiss-Prot
Match: SMT1_ARATH (Cycloartenol-C-24-methyltransferase OS=Arabidopsis thaliana GN=SMT1 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.825e-52
Identity = 96/223 (43.05%), Postives = 136/223 (60.99%), Query Frame = 3
Query:  186 GGSISAEEV---EDNYKEYWKFFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLR 845
            GG I   +V    + Y++Y  F    +E  K    D V+ +Y+L T  YE+GWG+SFHF+    G+S R++ + HE      + ++ G ++LDVGCG+GGP+R IA  S + V G+  NEYQ+ R +  N+ AG+D  C  V  +F+KMPF +N FD  Y+IEATCHAP     Y E++RVLKPG  + +YEW  TD ++ +N EH  I   IE GD LP +R
Sbjct:    8 GGKIDKSDVLTAVEKYEQYHVFHGGNEEERKANYTDMVNKYYDLATSFYEYGWGESFHFAQRWKGESLRESIKRHEHFLALQLGIQPGQKVLDVGCGIGGPLREIARFSNSVVTGLNNNEYQITRGKELNRLAGVDKTCNFVKADFMKMPFPENSFDAVYAIEATCHAPDAYGCYKEIYRVLKPGQCFAAYEWCMTDAFDPDNAEHQKIKGEIEIGDGLPDIR 230          
BLAST of CK935550 vs. ExPASy Swiss-Prot
Match: ERG6_CANGA (Sterol 24-C-methyltransferase OS=Candida glabrata GN=ERG6 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.395e-51
Identity = 99/232 (42.67%), Postives = 138/232 (59.48%), Query Frame = 3
Query:  150 AEQKGKRAVNLSGGSISAEEVEDNYKEYWKFFKRPKETTKEKVPDFVD---TFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALP 836
            AE +      LS    +  E    Y  +W   K  KE    ++ D+ +   ++YN+VTD YE+GWG SFHFS    G++ + A   HE+    +  +K GD +LDVGCGVGGP R IA  +  N++G+  N+YQ+ +A+ + KK  L    + V G+F+ M FE N FD  Y+IEATCHAPKLE VY E+++VLKPG  +  YEWV T+ Y+  N+EH  I   IE GD +P
Sbjct:   22 AESRTGLTALLSKNRNAQREAVSKYLRHWDG-KTDKEAEDRRLEDYNEATHSYYNVVTDFYEYGWGSSFHFSRFYKGENFQAAMARHEQYLAYMAGIKKGDLVLDVGCGVGGPARTIARFTGCNIIGLNNNDYQIQKAKYYAKKYNLQDHMDFVKGDFMNMEFEPNSFDKVYAIEATCHAPKLEGVYGEIYKVLKPGGTFAVYEWVMTENYDENNEEHRKIAYEIELGDGIP 252          
BLAST of CK935550 vs. ExPASy Swiss-Prot
Match: ERG6_YEAST (Sterol 24-C-methyltransferase OS=Saccharomyces cerevisiae GN=ERG6 PE=1 SV=4)

HSP 1 Score: 200.675 bits (509), Expect = 9.100e-51
Identity = 98/221 (44.34%), Postives = 134/221 (60.63%), Query Frame = 3
Query:  180 LSGGSISAEEVEDNYKEYW--KFFKRPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALP 836
            +S  + + +E    Y   W  +  K  +E   E   +   ++YN+VTD YE+GWG SFHFS    G+S   +   HE        ++ GD +LDVGCGVGGP R IA  +  NV+G+  N+YQ+ +A+ + KK  L    + V G+F+KM FE+N FD  Y+IEATCHAPKLE VY+E+++VLKPG  +  YEWV TDKY+  N EH  I   IE GD +P
Sbjct:   32 MSKNNSAQKEAVQKYLRNWDGRTDKDAEERRLEDYNEATHSYYNVVTDFYEYGWGSSFHFSRFYKGESFAASIARHEHYLAYKAGIQRGDLVLDVGCGVGGPAREIARFTGCNVIGLNNNDYQIAKAKYYAKKYNLSDQMDFVKGDFMKMDFEENTFDKVYAIEATCHAPKLEGVYSEIYKVLKPGGTFAVYEWVMTDKYDENNPEHRKIAYEIELGDGIP 252          
BLAST of CK935550 vs. ExPASy Swiss-Prot
Match: ERG6_YARLI (Sterol 24-C-methyltransferase OS=Yarrowia lipolytica GN=ERG6 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.648e-50
Identity = 93/180 (51.67%), Postives = 121/180 (67.22%), Query Frame = 3
Query:  297 FYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALP 836
            +YNLVTD YE+GWG SFHFS    G++ R AT  HE      + ++ G ++LDVGCGVGGP R IA  + AN+VG+  N+YQV R   +++  G       V G+F++M F DN FD  Y+IEAT HAP LE VY+E+FRVLKPG ++  YEWV TD+Y+  N EH DI  GIE+GD +P
Sbjct:   82 YYNLVTDFYEYGWGSSFHFSRYYKGEAFRQATARHEHYLAYKMGIQPGMKVLDVGCGVGGPAREIARFTGANIVGLNNNDYQVERGTHYSEVQGFGDQVTYVKGDFMQMDFPDNSFDAVYAIEATVHAPVLEGVYSEIFRVLKPGGVFGVYEWVMTDEYDESNPEHRDICYGIEKGDGIP 261          
BLAST of CK935550 vs. ExPASy Swiss-Prot
Match: ERG6_MAGGR (Sterol 24-C-methyltransferase OS=Magnaporthe grisea GN=ERG6 PE=2 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 4.516e-50
Identity = 102/219 (46.58%), Postives = 133/219 (60.73%), Query Frame = 3
Query:  216 DNYKEYWKFFKRPKETTK---EKVPDFVDT---FYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDS--LCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRS 848
            D Y  +W       ETTK   E+  D+      +YNLVTD YE+GWGQSFHF    PG++   A   +E      I +K G ++LD+GCGVGGP R IA  + AN+ GITINEYQV RAR + +  G  +    + V G+F+ +PFE   FD  YSIEAT HAPKLEDVY ++F VLKPG ++  YEWV TD Y+  +  H +I  GIE G  +  L++
Sbjct:   55 DQYFRHWDGKTAKTETTKVREERKADYATLTRQYYNLVTDFYEYGWGQSFHFCTFAPGETFASAITRYEHTLAHRIGIKKGMKVLDIGCGVGGPARQIAKFTGANITGITINEYQVERARRYAEMEGYGAGEQLKFVQGDFMALPFEKETFDAVYSIEATVHAPKLEDVYKQIFNVLKPGGIFGLYEWVMTDAYDENDPHHKEIRFGIEHGGGIANLQT 273          
BLAST of CK935550 vs. ExPASy Swiss-Prot
Match: SMT1_DICDI (Probable cycloartenol-C-24-methyltransferase 1 OS=Dictyostelium discoideum GN=smt1 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.314e-49
Identity = 98/223 (43.95%), Postives = 136/223 (60.99%), Query Frame = 3
Query:  204 EEVEDNYKEYWKFFK----RPKETTKEKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIDVKAGDRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARLHNKKAGLDSLCEVVCGNFLKMPFEDNHFDGAYSIEATCHAPKLEDVYAEVFRVLKPGSLYVSYEWVTTDKYEAENKEHVDIIQGIERGDALPGLRSYXEI 860
            ++V+D    Y + FK    +  +  K      V+TFY+L TD YE+GWGQSFHF+     +S   +   HE      + +  G +++D+GCGVGGPMR IA  S ANVVG+  NEYQ+ R +  N+ AGL  LC  +  +F+ +P EDN +D AY IEATCHAP L  +Y EVFR++KPG L+  YEW+ T+K+  E+   V+I + IE G+ LP L    EI
Sbjct:   30 DKVDDTLNGYKELFKGNDDKAIQARKNNYTHMVNTFYDLATDFYEFGWGQSFHFATRHKYESFEASIARHEMYMAHQLGLFPGMKVIDIGCGVGGPMRTIARFSGANVVGLNNNEYQIQRGKRLNESAGLSHLCSFIKADFMHVPVEDNTYDCAYQIEATCHAPDLVGLYKEVFRIVKPGGLFGGYEWIMTNKFNPEDPVEVNIKKQIELGNGLPDLVKPAEI 252          
The following BLAST results are available for this feature:
BLAST of CK935550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
SMT2_ARATH4.556e-13584.5924-methylenesterol C-methyltransferase 2 OS=Arabid... [more]
SMT3B_ARATH2.266e-12678.4124-methylenesterol C-methyltransferase 3 OS=Arabid... [more]
SMT2_ORYSJ4.588e-11174.5124-methylenesterol C-methyltransferase 2 OS=Oryza ... [more]
SMT1_ORYSJ6.733e-5445.09Cycloartenol-C-24-methyltransferase 1 OS=Oryza sat... [more]
SMT1_ARATH4.825e-5243.05Cycloartenol-C-24-methyltransferase OS=Arabidopsis... [more]
ERG6_CANGA2.395e-5142.67Sterol 24-C-methyltransferase OS=Candida glabrata ... [more]
ERG6_YEAST9.100e-5144.34Sterol 24-C-methyltransferase OS=Saccharomyces cer... [more]
ERG6_YARLI2.648e-5051.67Sterol 24-C-methyltransferase OS=Yarrowia lipolyti... [more]
ERG6_MAGGR4.516e-5046.58Sterol 24-C-methyltransferase OS=Magnaporthe grise... [more]
SMT1_DICDI1.314e-4943.95Probable cycloartenol-C-24-methyltransferase 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_D03 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935550 ID=CK935550; Name=CK935550; organism=Citrus sinensis; type=EST; length=870bp
GGGGACACACACACACAACACAGTCACGCTCGCACTCCATCTCTCTCTCC
TTCTAACTTTTTCAAGTCTCAATGGATTCTCTCGTTCTCTTTTGCACCGG
CGCTCTCCTTGCCGGTGGCCTCTACTGGTTTGTCTGCGTACTCGGCCCCG
CCGAACAAAAGGGCAAGCGCGCCGTCAACCTCTCCGGCGGCTCGATCTCC
GCCGAGGAAGTCGAAGACAATTATAAAGAGTACTGGAAGTTCTTTAAACG
CCCGAAGGAGACAACCAAGGAGAAGGTTCCAGATTTCGTCGACACGTTTT
ACAACTTAGTCACAGACATTTACGAGTGGGGGTGGGGCCAGTCCTTCCAC
TTCTCCCCCTCTATCCCCGGGAAATCCCACCGTGACGCCACGCGCCTCCA
CGAGGAGATGGCCGTCGATCTCATTGACGTCAAGGCCGGAGACCGCATTC
TCGACGTCGGATGCGGGGTCGGCGGTCCCATGCGTGCCATCGCCGCCCAC
TCGCGTGCCAATGTCGTCGGCATCACAATCAACGAGTATCAAGTGAATCG
TGCTCGTCTGCACAACAAGAAGGCGGGATTAGATTCTCTCTGCGAAGTAG
TATGCGGAAACTTCCTAAAGATGCCGTTTGAAGACAACCACTTCGACGGC
GCGTACTCAATCGAAGCGACATGTCACGCGCCGAAGCTGGAGGACGTGTA
CGCTGAGGTCTTTAGGGTTTTGAAGCCCGGATCTCTATACGTGTCGTACG
AGTGGGTCACGACAGACAAGTACGAAGCGGAAAACAAAGAACACGTGGAC
ATCATTCAGGGTATCGAACGTGGAGATGCGTTGCCTGGGCTGAGAAGCTA
CGNCGAAATTACCGAGATAG
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