CK935552

Overview
NameCK935552
Unique NameCK935552
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935552_ssr25 microsatellite CK935552_ssr25:25..34. BLAST: Citrus ESTs to Populus V2 proteins
CK935552_ssr36 microsatellite CK935552_ssr36:36..53. BLAST: Citrus ESTs to Populus V2 proteins
Homology
BLAST of CK935552 vs. ExPASy Swiss-Prot
Match: RL391_ARATH (60S ribosomal protein L39-1 OS=Arabidopsis thaliana GN=RPL39A PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 2.252e-22
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 1
Query:  124 PSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRAKLGF 273
            PSHK+FMIKKKL KKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRR KLGF
Sbjct:    2 PSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51          
BLAST of CK935552 vs. ExPASy Swiss-Prot
Match: RL39_ORYSJ (60S ribosomal protein L39 OS=Oryza sativa subsp. japonica GN=RPL39 PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 2.941e-22
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 1
Query:  124 PSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRAKLGF 273
            PSHKTF IKKKLAKKMRQNRPIP+WIRMRTDNTIRYNAKRRHWRR KLGF
Sbjct:    2 PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51          
BLAST of CK935552 vs. ExPASy Swiss-Prot
Match: RL39_MAIZE (60S ribosomal protein L39 OS=Zea mays GN=RPL39 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.941e-22
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 1
Query:  124 PSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRAKLGF 273
            PSHKTF IKKKLAKKMRQNRPIP+WIRMRTDNTIRYNAKRRHWRR KLGF
Sbjct:    2 PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51          
BLAST of CK935552 vs. ExPASy Swiss-Prot
Match: RL392_ARATH (60S ribosomal protein L39-2 OS=Arabidopsis thaliana GN=RPL39B PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.243e-21
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:  124 PSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRAKLGF 273
            PSHK+FMIKKKL KKMRQNRPIP+WIR+RTDN IRYNAKRRHWRR KLGF
Sbjct:    2 PSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51          
BLAST of CK935552 vs. ExPASy Swiss-Prot
Match: RL39_SPOFR (60S ribosomal protein L39 OS=Spodoptera frugiperda GN=RpL39 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.789e-18
Identity = 38/47 (80.85%), Postives = 44/47 (93.62%), Query Frame = 1
Query:  127 SHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRAKL 267
            +HKTF+IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRR KL
Sbjct:    3 AHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 49          
BLAST of CK935552 vs. ExPASy Swiss-Prot
Match: RL39_PLUXY (60S ribosomal protein L39 OS=Plutella xylostella GN=RpL39 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.789e-18
Identity = 38/47 (80.85%), Postives = 44/47 (93.62%), Query Frame = 1
Query:  127 SHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRAKL 267
            +HKTF+IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRR KL
Sbjct:    3 AHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 49          
BLAST of CK935552 vs. ExPASy Swiss-Prot
Match: RL39_RAT (60S ribosomal protein L39 OS=Rattus norvegicus GN=Rpl39 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 4.113e-16
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 1
Query:  127 SHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRAKLG 270
            SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRR KLG
Sbjct:    3 SHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50          
BLAST of CK935552 vs. ExPASy Swiss-Prot
Match: RL39_MOUSE (60S ribosomal protein L39 OS=Mus musculus GN=Rpl39 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 4.113e-16
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 1
Query:  127 SHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRAKLG 270
            SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRR KLG
Sbjct:    3 SHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50          
BLAST of CK935552 vs. ExPASy Swiss-Prot
Match: RL39_ICTPU (60S ribosomal protein L39 OS=Ictalurus punctatus GN=rpl39 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.113e-16
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 1
Query:  127 SHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRAKLG 270
            SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRR KLG
Sbjct:    3 SHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50          
BLAST of CK935552 vs. ExPASy Swiss-Prot
Match: RL39_HUMAN (60S ribosomal protein L39 OS=Homo sapiens GN=RPL39 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 4.113e-16
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 1
Query:  127 SHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRAKLG 270
            SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRR KLG
Sbjct:    3 SHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50          
The following BLAST results are available for this feature:
BLAST of CK935552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RL391_ARATH2.252e-2292.0060S ribosomal protein L39-1 OS=Arabidopsis thalian... [more]
RL39_ORYSJ2.941e-2294.0060S ribosomal protein L39 OS=Oryza sativa subsp. j... [more]
RL39_MAIZE2.941e-2294.0060S ribosomal protein L39 OS=Zea mays GN=RPL39 PE=... [more]
RL392_ARATH7.243e-2188.0060S ribosomal protein L39-2 OS=Arabidopsis thalian... [more]
RL39_SPOFR9.789e-1880.8560S ribosomal protein L39 OS=Spodoptera frugiperda... [more]
RL39_PLUXY9.789e-1880.8560S ribosomal protein L39 OS=Plutella xylostella G... [more]
RL39_RAT4.113e-1677.0860S ribosomal protein L39 OS=Rattus norvegicus GN=... [more]
RL39_MOUSE4.113e-1677.0860S ribosomal protein L39 OS=Mus musculus GN=Rpl39... [more]
RL39_ICTPU4.113e-1677.0860S ribosomal protein L39 OS=Ictalurus punctatus G... [more]
RL39_HUMAN4.113e-1677.0860S ribosomal protein L39 OS=Homo sapiens GN=RPL39... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_D06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935552 ID=CK935552; Name=CK935552; organism=Citrus sinensis; type=EST; length=549bp
GGGGAAGAAGCGAAAATGGTAACTCACACACACAGTCTCTCTCTCTCTCT
CTCTGATTGTGTAATTGACTAAGTTTTAGTTCGGGTTTCTTATTGGTTTT
TAATGTAAATAATTATGGAACAGCCGTCACACAAGACATTTATGATCAAG
AAGAAGCTTGCCAAGAAGATGAGGCAAAACAGGCCCATCCCTCACTGGAT
CCGTATGCGCACCGACAACACCATCAGATACAACGCAAAGCGCAGGCACT
GGCGCCGCGCAAAGCTTGGATTCTAAGGTGTTTAGGATCAGATGGATTTG
TTGTTGGGTTTGTTTTAAGCTTATGTTCGAGTAATTTAGACTATGATACC
TGGCCTTATGTTTTATATTTAGTTTTGAGAAACTCATTTGTATAAGGAAC
TCATTGAGAGTCCTTATTTTATTTTGTGCCCTCTTGAGTTAATTTGGACT
TATGAAATTTGACTTGTTTCGATCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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