CK935552
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK935552 vs. ExPASy Swiss-Prot
Match: RL391_ARATH (60S ribosomal protein L39-1 OS=Arabidopsis thaliana GN=RPL39A PE=2 SV=2) HSP 1 Score: 105.145 bits (261), Expect = 2.252e-22 Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 1 Query: 124 PSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRAKLGF 273 PSHK+FMIKKKL KKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRR KLGF Sbjct: 2 PSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
BLAST of CK935552 vs. ExPASy Swiss-Prot
Match: RL39_ORYSJ (60S ribosomal protein L39 OS=Oryza sativa subsp. japonica GN=RPL39 PE=3 SV=2) HSP 1 Score: 104.76 bits (260), Expect = 2.941e-22 Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 1 Query: 124 PSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRAKLGF 273 PSHKTF IKKKLAKKMRQNRPIP+WIRMRTDNTIRYNAKRRHWRR KLGF Sbjct: 2 PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51
BLAST of CK935552 vs. ExPASy Swiss-Prot
Match: RL39_MAIZE (60S ribosomal protein L39 OS=Zea mays GN=RPL39 PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 2.941e-22 Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 1 Query: 124 PSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRAKLGF 273 PSHKTF IKKKLAKKMRQNRPIP+WIRMRTDNTIRYNAKRRHWRR KLGF Sbjct: 2 PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51
BLAST of CK935552 vs. ExPASy Swiss-Prot
Match: RL392_ARATH (60S ribosomal protein L39-2 OS=Arabidopsis thaliana GN=RPL39B PE=2 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 7.243e-21 Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 1 Query: 124 PSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRAKLGF 273 PSHK+FMIKKKL KKMRQNRPIP+WIR+RTDN IRYNAKRRHWRR KLGF Sbjct: 2 PSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51
BLAST of CK935552 vs. ExPASy Swiss-Prot
Match: RL39_SPOFR (60S ribosomal protein L39 OS=Spodoptera frugiperda GN=RpL39 PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 9.789e-18 Identity = 38/47 (80.85%), Postives = 44/47 (93.62%), Query Frame = 1 Query: 127 SHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRAKL 267 +HKTF+IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRR KL Sbjct: 3 AHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 49
BLAST of CK935552 vs. ExPASy Swiss-Prot
Match: RL39_PLUXY (60S ribosomal protein L39 OS=Plutella xylostella GN=RpL39 PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 9.789e-18 Identity = 38/47 (80.85%), Postives = 44/47 (93.62%), Query Frame = 1 Query: 127 SHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRAKL 267 +HKTF+IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRR KL Sbjct: 3 AHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 49
BLAST of CK935552 vs. ExPASy Swiss-Prot
Match: RL39_RAT (60S ribosomal protein L39 OS=Rattus norvegicus GN=Rpl39 PE=1 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 4.113e-16 Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 1 Query: 127 SHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRAKLG 270 SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRR KLG Sbjct: 3 SHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50
BLAST of CK935552 vs. ExPASy Swiss-Prot
Match: RL39_MOUSE (60S ribosomal protein L39 OS=Mus musculus GN=Rpl39 PE=2 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 4.113e-16 Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 1 Query: 127 SHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRAKLG 270 SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRR KLG Sbjct: 3 SHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50
BLAST of CK935552 vs. ExPASy Swiss-Prot
Match: RL39_ICTPU (60S ribosomal protein L39 OS=Ictalurus punctatus GN=rpl39 PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 4.113e-16 Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 1 Query: 127 SHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRAKLG 270 SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRR KLG Sbjct: 3 SHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50
BLAST of CK935552 vs. ExPASy Swiss-Prot
Match: RL39_HUMAN (60S ribosomal protein L39 OS=Homo sapiens GN=RPL39 PE=2 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 4.113e-16 Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 1 Query: 127 SHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRAKLG 270 SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRR KLG Sbjct: 3 SHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50 The following BLAST results are available for this feature:
BLAST of CK935552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 23
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Sequences
The
following sequences are available for this feature:
EST sequence >CK935552 ID=CK935552; Name=CK935552; organism=Citrus sinensis; type=EST; length=549bpback to top |