CK935559

Overview
NameCK935559
Unique NameCK935559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13273 contig Csv1_Contig13273:1..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK935559 vs. ExPASy Swiss-Prot
Match: CID2_ARATH (Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis thaliana GN=CID2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.111e-16
Identity = 58/164 (35.37%), Postives = 86/164 (52.44%), Query Frame = 2 
Query:   92 STLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDNGGDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISSPLPANDADALMKNMRVSIS---------PKSSMEAAKYVEKPAKYVNPKCSPRR---IQQPR 547
            STLNPNAP+F P  FR+VEDFSP+WW L+TTS W+ ++WLS + + +     GGDD                      FS +E +F+E + S  S+  +++  +   D  + +K M ++I+          K S  + KY +K  KY+NP  + RR   I QPR
Sbjct:   10 STLNPNAPVFDPVEFREVEDFSPKWWDLVTTSKWFRDFWLSANSENEFL---GGDD----------------------FSVMEEEFEEMIAS--SDGGSMADTVTEADVASYLK-MLLNIAESTKEKIYRSKVSSCSPKYNQK--KYMNPNFNCRRNHHIYQPR 143
The following BLAST results are available for this feature:
BLAST of CK935559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CID2_ARATH8.111e-1635.37Polyadenylate-binding protein-interacting protein ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004554_C08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935559 ID=CK935559; Name=CK935559; organism=Citrus sinensis; type=EST; length=788bp
GGGGAACACGTAGCAAAACGAAAAAATATCTTATCTCAAATCAAAGATCA
GAAGTGAGAATTGGACTTTGATGGCGCTAGTTTCAGGAAGGTCGACGTTG
AACCCCAATGCCCCACTCTTCATTCCGGCTGCTTTTCGCCAAGTGGAGGA
TTTCTCCCCCGAATGGTGGCAGCTGATCACGACCTCCACATGGTACCACA
ACTACTGGCTCAGCCAGCATCAAGACGAGGATGGCTTTTATGACAATGGT
GGAGATGATGAATTTGATGTCAGCAATGTAGCTGACTTGCTTCCAGATAC
GTTTGACCTTGATGCTGGCGAAAATTTCTCTAGCATAGAAGCTCAATTCG
ATGAGTTTGTTATGTCGTTTGAAAGTGAACTGGAAAACATTTCATCCCCA
CTGCCTGCAAATGATGCAGATGCACTGATGAAGAATATGAGGGTCTCGAT
ATCTCCCAAATCTTCCATGGAAGCTGCCAAATATGTTGAGAAACCGGCCA
AGTATGTGAACCCAAAGTGCAGCCCCCGCCGCATCCAGCAACCCCGTTGA
AGAGGGAAAATGTGCAATGGCTGTTGTTTGCGGTTTGTAGTTTTTTGCTT
TCTGTAGTTGCTGTATAGAGCAAGGCTCTTAACTCTGTATAATTCCTTGT
TCATTCTCGTCTTTAATTTCAGTGAAACAAAGAATCATTGGGAAAAAAAA
AATGTAAAAAAGATGTACAATTTAGGATAAATGAAACAAGAAATTGTTCT
CTTTAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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