CK935560

Overview
NameCK935560
Unique NameCK935560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1827 contig Csv1_Contig1827:102..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK935560 vs. ExPASy Swiss-Prot
Match: IF1A_ONOVI (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 6.167e-55
Identity = 106/114 (92.98%), Postives = 110/114 (96.49%), Query Frame = 1 
Query:  130 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGI-AGGLDKEDDGA 468
            EADD+KRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILK MPDEARLLKAYGELP++TRLNEGI AGGLD+E D A
Sbjct:   18 EADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLNEGIGAGGLDEEMDTA 131
[Close]
BLAST of CK935560 vs. ExPASy Swiss-Prot
Match: IF1A_WHEAT (Eukaryotic translation initiation factor 1A OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 3.502e-50
Identity = 94/112 (83.93%), Postives = 103/112 (91.96%), Query Frame = 1 
Query:  130 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGLDKEDDG 465
            EADD+KRELVFKEDGQEYAQV RMLGNGRCEA+C+DGTKRLCHIRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELP++ RLNEG+     +E +G
Sbjct:   18 EADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCHIRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEGVDVDGPEEGEG 129
[Close]
BLAST of CK935560 vs. ExPASy Swiss-Prot
Match: IF1AX_PONAB (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EIF1AX PE=2 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 1.129e-40
Identity = 81/111 (72.97%), Postives = 90/111 (81.08%), Query Frame = 1 
Query:  130 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGLDKEDD 462
            E + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE    G   +D+
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDE 128
[Close]
BLAST of CK935560 vs. ExPASy Swiss-Prot
Match: IF1AX_MOUSE (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus GN=Eif1ay PE=2 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 1.129e-40
Identity = 81/111 (72.97%), Postives = 90/111 (81.08%), Query Frame = 1 
Query:  130 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGLDKEDD 462
            E + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE    G   +D+
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDE 128
[Close]
BLAST of CK935560 vs. ExPASy Swiss-Prot
Match: IF1AX_HUMAN (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.129e-40
Identity = 81/111 (72.97%), Postives = 90/111 (81.08%), Query Frame = 1 
Query:  130 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGLDKEDD 462
            E + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE    G   +D+
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDE 128
[Close]
BLAST of CK935560 vs. ExPASy Swiss-Prot
Match: IF1AY_PANTR (Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Pan troglodytes GN=EIF1AY PE=2 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 2.515e-40
Identity = 80/111 (72.07%), Postives = 90/111 (81.08%), Query Frame = 1 
Query:  130 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGLDKEDD 462
            E + EKRELVFKEDGQEYAQV++MLGNGR EA+C DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE    G   +D+
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDE 128
[Close]
BLAST of CK935560 vs. ExPASy Swiss-Prot
Match: IF1AY_HUMAN (Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Homo sapiens GN=EIF1AY PE=1 SV=4)

HSP 1 Score: 165.622 bits (418), Expect = 2.515e-40
Identity = 80/111 (72.07%), Postives = 90/111 (81.08%), Query Frame = 1 
Query:  130 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGLDKEDD 462
            E + EKRELVFKEDGQEYAQV++MLGNGR EA+C DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE    G   +D+
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDE 128
[Close]
BLAST of CK935560 vs. ExPASy Swiss-Prot
Match: IF1A_RAT (Eukaryotic translation initiation factor 1A OS=Rattus norvegicus GN=Eif1a PE=2 SV=3)

HSP 1 Score: 165.236 bits (417), Expect = 3.285e-40
Identity = 79/111 (71.17%), Postives = 90/111 (81.08%), Query Frame = 1 
Query:  130 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGLDKEDD 462
            E + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG +RLCHIRGK+ KKVWI   DIIL+GLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE    G   +D+
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDE 128
[Close]
BLAST of CK935560 vs. ExPASy Swiss-Prot
Match: IF1A_MOUSE (Eukaryotic translation initiation factor 1A OS=Mus musculus GN=Eif1a PE=2 SV=3)

HSP 1 Score: 165.236 bits (417), Expect = 3.285e-40
Identity = 79/111 (71.17%), Postives = 90/111 (81.08%), Query Frame = 1 
Query:  130 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGLDKEDD 462
            E + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG +RLCHIRGK+ KKVWI   DIIL+GLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE    G   +D+
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDE 128
[Close]
BLAST of CK935560 vs. ExPASy Swiss-Prot
Match: IF1A_RABIT (Eukaryotic translation initiation factor 1A OS=Oryctolagus cuniculus GN=EIF1A PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 8.946e-38
Identity = 78/111 (70.27%), Postives = 88/111 (79.28%), Query Frame = 1 
Query:  130 EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGLDKEDD 462
            E + EKRELVFKEDGQEYAQV++MLGNGR EAM  DG KRL HIRGK+ KKVWI   DIILVGLR+YQD+KADVILKY  DEAR LKAYGELPE  ++NE    G   +D+
Sbjct:   18 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMLFDGVKRLFHIRGKLRKKVWINTSDIILVGLREYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDE 128
The following BLAST results are available for this feature:
BLAST of CK935560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
IF1A_ONOVI6.167e-5592.98Eukaryotic translation initiation factor 1A OS=Ono... [more]
IF1A_WHEAT3.502e-5083.93Eukaryotic translation initiation factor 1A OS=Tri... [more]
IF1AX_PONAB1.129e-4072.97Eukaryotic translation initiation factor 1A, X-chr... [more]
IF1AX_MOUSE1.129e-4072.97Eukaryotic translation initiation factor 1A, X-chr... [more]
IF1AX_HUMAN1.129e-4072.97Eukaryotic translation initiation factor 1A, X-chr... [more]
IF1AY_PANTR2.515e-4072.07Eukaryotic translation initiation factor 1A, Y-chr... [more]
IF1AY_HUMAN2.515e-4072.07Eukaryotic translation initiation factor 1A, Y-chr... [more]
IF1A_RAT3.285e-4071.17Eukaryotic translation initiation factor 1A OS=Rat... [more]
IF1A_MOUSE3.285e-4071.17Eukaryotic translation initiation factor 1A OS=Mus... [more]
IF1A_RABIT8.946e-3870.27Eukaryotic translation initiation factor 1A OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_C09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935560 ID=CK935560; Name=CK935560; organism=Citrus sinensis; type=EST; length=742bp
GGGTGAGAAACAGATTGATTTCAATCTTGCTGCTTTTTAACTCTCCGACT
CCACCTCTCCCCCAAAGAATCAGAAACCATGCCGAAGAATAAGGGAAAGG
GAGGAAAGAACAGGAAGAGGGGAAAGAATGAAGCTGACGACGAGAAGCGT
GAGCTTGTCTTCAAGGAAGACGGACAGGAATATGCCCAAGTCCTTCGTAT
GCTCGGCAATGGTCGGTGTGAAGCTATGTGCATCGATGGAACCAAGCGTC
TTTGCCACATCCGTGGGAAGATGCACAAAAAGGTTTGGATTGCAGCTGGT
GATATAATACTTGTTGGCCTACGTGATTATCAGGATGACAAGGCTGATGT
CATCCTCAAGTATATGCCCGACGAGGCAAGGCTTCTGAAGGCTTATGGTG
AACTTCCAGAGAGTACCCGTCTCAATGAGGGCATTGCTGGTGGTCTTGAT
AAAGAGGATGATGGCGCTGATAATGATTACATCGAGTTTGAAGACGAAGA
TATTGATAAGATCTAGGCTCCGAGAATCGACTCTGTCTGGGGTTTATGTT
CAATATTTAGCAAAAATGGAGTATGCCAATGTATTGGTTACTTAAAAGCT
GAAAATATGTGTTTGCAGCTTATATATTTGGAATTTTTAATGGTGAGCCT
GTCATATTTCGTGTAACGCCTATTACTTGCTTATTAATTTTGTTTAGTTC
TGCACTTTTTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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