CK935563

Overview
NameCK935563
Unique NameCK935563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9377 contig Csv1_Contig9377:55..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935563 vs. ExPASy Swiss-Prot
Match: MPPA_SOLTU (Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.445e-52
Identity = 110/196 (56.12%), Postives = 127/196 (64.80%), Query Frame = 1
Query:   94 MYRNAASRLRALKGHVRCRVPXXXXXXXXXXXXXXXXXXXXXXXWLTGERXXXXXXLDFXXXXXXXXXXXXDYVEPGKTNISTLPNGVKIASETSLSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNTSHLRIVREVEAIGGNVQASASTEQMGYSFDALKTYVPEMVELLIDCVTNPVFLDWEVNEQL 681
            MYR A+SRL +LK     RV                        W+TG+       LDF            DYVEP KT I+TL NG+K+ASE S++P ASI LYV CGSIYE+P S+G THLLERMAF+ST N SHLRIVRE+EAIGGNV ASAS E M Y++DALKTYVP+MVE+L DCV NP FLDWEV EQL
Sbjct:    1 MYRCASSRLSSLKARQGNRV----LTRFSSSAAVATKPSGGLFSWITGDTSSSVTPLDFPLNDVKLSPPLPDYVEPAKTQITTLANGLKVASEASVNPAASIGLYVDCGSIYETPASYGATHLLERMAFKSTLNRSHLRIVREIEAIGGNVTASASREHMIYTYDALKTYVPQMVEMLADCVRNPAFLDWEVKEQL 192          
BLAST of CK935563 vs. ExPASy Swiss-Prot
Match: MPPA1_ARATH (Probable mitochondrial-processing peptidase subunit alpha-1 OS=Arabidopsis thaliana GN=At1g51980 PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.936e-50
Identity = 109/196 (55.61%), Postives = 122/196 (62.24%), Query Frame = 1
Query:   94 MYRNAASRLRALKGHVRCRVPXXXXXXXXXXXXXXXXXXXXXXXWLTGERXXXXXXLDFXXXXXXXXXXXXDYVEPGKTNISTLPNGVKIASETSLSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNTSHLRIVREVEAIGGNVQASASTEQMGYSFDALKTYVPEMVELLIDCVTNPVFLDWEVNEQL 681
            MYR AASR RALKG V  R                         WL+G        LD             D VEP K  I+TLPNG+KIASET+ +P ASI LYV CGSIYE+P   G THLLERMAF+ST N +H R+VRE+EAIGGN  ASAS EQM Y+ DALKTYVPEMVE+LID V NP FLDWEVNE+L
Sbjct:    1 MYRTAASRARALKG-VLTRSLRPARYASSSAVAETSSSTPAYLSWLSGGSRAALTSLDMPLQGVSLPPPLADKVEPSKLQITTLPNGLKIASETTPNPAASIGLYVDCGSIYEAPYFHGATHLLERMAFKSTLNRTHFRLVREIEAIGGNTSASASREQMSYTIDALKTYVPEMVEVLIDSVRNPAFLDWEVNEEL 195          
BLAST of CK935563 vs. ExPASy Swiss-Prot
Match: MPPA2_ARATH (Probable mitochondrial-processing peptidase subunit alpha-2 OS=Arabidopsis thaliana GN=At3g16480 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.388e-47
Identity = 103/196 (52.55%), Postives = 120/196 (61.22%), Query Frame = 1
Query:   94 MYRNAASRLRALKGHVRCRVPXXXXXXXXXXXXXXXXXXXXXXXWLTGERXXXXXXLDFXXXXXXXXXXXXDYVEPGKTNISTLPNGVKIASETSLSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNTSHLRIVREVEAIGGNVQASASTEQMGYSFDALKTYVPEMVELLIDCVTNPVFLDWEVNEQL 681
            MYR AASR +ALKG     +                        WL+G        ++             D+VEP K   +TLPNG+ IA+E S +P ASI LYV CGSIYE+P   G THLLERMAF+ST N SH R+VRE+EAIGGN  ASAS EQMGY+ DALKTYVPEMVE+LID V NP FLDWEVNE+L
Sbjct:    1 MYRTAASRAKALKG-----ILNHNFRASRYASSSAVATSSSSSSWLSGGYSSSLPSMNIPLAGVSLPPPLSDHVEPSKLKTTTLPNGLTIATEMSPNPAASIGLYVDCGSIYETPQFRGATHLLERMAFKSTLNRSHFRLVREIEAIGGNTSASASREQMGYTIDALKTYVPEMVEVLIDSVRNPAFLDWEVNEEL 191          
BLAST of CK935563 vs. ExPASy Swiss-Prot
Match: MPPA1_DICDI (Mitochondrial-processing peptidase subunit alpha-1 OS=Dictyostelium discoideum GN=mppA1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.777e-18
Identity = 44/119 (36.97%), Postives = 73/119 (61.34%), Query Frame = 1
Query:  325 KTNISTLPNGVKIASETSLSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNTSHLRIVREVEAIGGNVQASASTEQMGYSFDALKTYVPEMVELLIDCVTNPVFLDWEVNEQL 681
            K  ISTLPNG+++ S+ +   V +I LY+  G+ YESP   G  +LLE+M F+ T+N S   I++E+E I  N  AS+S E +  S + L+  +  ++ +L D + +P + + E+ EQ+
Sbjct:  143 KAEISTLPNGIRVVSKQTHEGVCAIGLYINAGTKYESPQDRGVFNLLEKMTFKETKNNSTSEIIKELEEISMNAMASSSREMINVSLEVLRKDLEFVLSILSDQIKSPTYSEEELREQI 261          
BLAST of CK935563 vs. ExPASy Swiss-Prot
Match: QCR2_HUMAN (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Homo sapiens GN=UQCRC2 PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 2.575e-17
Identity = 45/118 (38.14%), Postives = 69/118 (58.47%), Query Frame = 1
Query:  316 EPGKTNISTLPNGVKIASETSLSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNTSHLRIVREVEAIGGNVQASASTEQMGYSFDALKTYVPEMVELLIDCVTNPVFLDWEV 669
            +P     + LPNG+ IAS  + SPV+ I L++  GS YE   + GTTHLL   +  +T+  S  +I R +EA+GG +  +A+ E M Y+ + L+  V  ++E L++  T P F  WEV
Sbjct:   34 QPQDLEFTKLPNGLVIASLENYSPVSRIGLFIKAGSRYEDFSNLGTTHLLRLTSSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVECLRGDVDILMEFLLNVTTAPEFRRWEV 151          
BLAST of CK935563 vs. ExPASy Swiss-Prot
Match: QCR2_MOUSE (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Mus musculus GN=Uqcrc2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.278e-16
Identity = 41/119 (34.45%), Postives = 71/119 (59.66%), Query Frame = 1
Query:  313 VEPGKTNISTLPNGVKIASETSLSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNTSHLRIVREVEAIGGNVQASASTEQMGYSFDALKTYVPEMVELLIDCVTNPVFLDWEV 669
            ++P     + LPNG+ IAS  + +P++ I L+V  GS YE   + GT+HLL   +  +T+  S  +I R +EA+GG +  +A+ E M Y+ + +++ +  ++E L++  T P F  WEV
Sbjct:   33 LQPQDLEFTKLPNGLVIASLENYAPLSRIGLFVKAGSRYEDSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVEGIRSDIEILMEFLLNVTTAPEFRRWEV 151          
BLAST of CK935563 vs. ExPASy Swiss-Prot
Match: QCR2_RAT (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Rattus norvegicus GN=Uqcrc2 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.857e-16
Identity = 40/119 (33.61%), Postives = 71/119 (59.66%), Query Frame = 1
Query:  313 VEPGKTNISTLPNGVKIASETSLSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNTSHLRIVREVEAIGGNVQASASTEQMGYSFDALKTYVPEMVELLIDCVTNPVFLDWEV 669
            ++P +   + LPNG+ IAS  + +P++ I L++  GS YE+    GT+HLL   +  +T+  S  +I R +EA+GG +  +A+ E M Y+ + ++  +  ++E L++  T P F  WEV
Sbjct:   32 LQPQELEFTKLPNGLVIASLENYAPLSRIGLFIKAGSRYENYNYLGTSHLLRLASTLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVEGIRDDIEILMEFLLNVTTAPEFRRWEV 150          
BLAST of CK935563 vs. ExPASy Swiss-Prot
Match: MPPA_NEUCR (Mitochondrial-processing peptidase subunit alpha OS=Neurospora crassa GN=mpp PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.857e-16
Identity = 40/119 (33.61%), Postives = 69/119 (57.98%), Query Frame = 1
Query:  325 KTNISTLPNGVKIASETSLSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNTSHLRIVREVEAIGGNVQASASTEQMGYSFDALKTYVPEMVELLIDCVTNPVFLDWEVNEQL 681
            + NI+TL NGV++ASE      + + +Y+  GS YE+    G +H+++R+AF+ST   +   ++  VE +GGN+Q ++S E M Y        +P  VEL+ + + +P   D E+  Q+
Sbjct:   51 RDNITTLSNGVRVASEDLPDAFSGVGVYIDAGSRYENDYVRGASHIMDRLAFKSTSTRTADEMLETVEKLGGNIQCASSRESMMYQAATFNKAIPTAVELMAETIRDPKLTDEELEGQI 169          
BLAST of CK935563 vs. ExPASy Swiss-Prot
Match: QCR2_BOVIN (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Bos taurus GN=UQCRC2 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.343e-16
Identity = 41/117 (35.04%), Postives = 68/117 (58.12%), Query Frame = 1
Query:  319 PGKTNISTLPNGVKIASETSLSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNTSHLRIVREVEAIGGNVQASASTEQMGYSFDALKTYVPEMVELLIDCVTNPVFLDWEV 669
            P     + LPNG+ IAS  + +P + I L++  GS YE+  + GT+HLL   +  +T+  S  +I R +EA+GG +  +++ E M Y+ + L+  V  ++E L++  T P F  WEV
Sbjct:   35 PQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEV 151          
BLAST of CK935563 vs. ExPASy Swiss-Prot
Match: QCR1_RAT (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Rattus norvegicus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.159e-15
Identity = 40/118 (33.90%), Postives = 70/118 (59.32%), Query Frame = 1
Query:  325 KTNISTLPNGVKIASETSLSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNTSHLRIVREVEAIGGNVQASASTEQMGYSFDALKTYVPEMVELLIDCVTNPVFLDWEVNEQ 678
            +T +S L NG+++ASE S  P  ++ +++  GS YE+  + G  + LE +AF+ T+N     + +EVE+IG ++ A ++ E   Y   AL   +P++VELL D V N    D ++ ++
Sbjct:   47 ETQVSVLDNGLRVASEQSSHPTCTVGVWIDVGSRYETEKNNGAGYFLEHLAFKGTKNRPGNALEKEVESIGAHLNAYSTREHTAYLIKALSKDLPKVVELLADIVQNISLEDSQIEKE 164          
The following BLAST results are available for this feature:
BLAST of CK935563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
MPPA_SOLTU1.445e-5256.12Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA1_ARATH3.936e-5055.61Probable mitochondrial-processing peptidase subuni... [more]
MPPA2_ARATH2.388e-4752.55Probable mitochondrial-processing peptidase subuni... [more]
MPPA1_DICDI6.777e-1836.97Mitochondrial-processing peptidase subunit alpha-1... [more]
QCR2_HUMAN2.575e-1738.14Cytochrome b-c1 complex subunit 2, mitochondrial O... [more]
QCR2_MOUSE1.278e-1634.45Cytochrome b-c1 complex subunit 2, mitochondrial O... [more]
QCR2_RAT4.857e-1633.61Cytochrome b-c1 complex subunit 2, mitochondrial O... [more]
MPPA_NEUCR4.857e-1633.61Mitochondrial-processing peptidase subunit alpha O... [more]
QCR2_BOVIN6.343e-1635.04Cytochrome b-c1 complex subunit 2, mitochondrial O... [more]
QCR1_RAT9.159e-1533.90Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_C12 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935563 ID=CK935563; Name=CK935563; organism=Citrus sinensis; type=EST; length=682bp
GGGGGAGCCTCTTTCTCTCGATTAGCTGCCAGTCTTCAACACTTGTCCCG
TTCAAATTAGGGTTTTGGAGAATTGACTATCAAATCAATCAACATGTACA
GAAACGCAGCCTCTCGTCTTCGAGCCCTCAAGGGCCATGTGCGTTGTAGG
GTGCCTTCAGCCACAAGATTTGCAAGTTCCAGTGCCGTTGCTTCAACTTC
ATCCTCTTCGGGTGGTCTCTTTAGCTGGTTGACTGGGGAACGGTCCAGTT
CTTCACCTTCTCTGGACTTTCCACTTCCGGGTGTCTCTCTTCCACCTTCA
TTGCCTGATTATGTTGAACCTGGTAAAACCAACATTTCTACTCTACCAAA
TGGTGTCAAAATTGCCTCGGAAACATCATTGAGTCCTGTAGCCTCAATAT
CGTTATATGTTGGTTGTGGTTCAATTTATGAGTCACCAATCTCATTTGGG
ACAACACACTTGCTTGAGCGTATGGCTTTTAGAAGTACAAGAAATACGAG
TCACTTGCGTATTGTGCGAGAAGTGGAGGCAATTGGTGGCAATGTCCAAG
CCTCAGCTTCTACGGAGCAGATGGGTTACTCCTTTGATGCTTTGAAAACT
TATGTTCCTGAAATGGTAGAGCTTCTTATTGACTGTGTGACAAACCCTGT
TTTTCTGGATTGGGAGGTCAACGAACAGCTCA
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