CK935589

Overview
NameCK935589
Unique NameCK935589
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2697 contig Csv1_Contig2697:53..934. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935589 vs. ExPASy Swiss-Prot
Match: RETOL_ARATH (Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2)

HSP 1 Score: 390.963 bits (1003), Expect = 4.857e-108
Identity = 193/295 (65.42%), Postives = 226/295 (76.61%), Query Frame = 3
Query:    3 GEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLAENATDVVYKWQLVAPATDDNLFMRMLLQPVTRNKKPTVRASIVALYLGGADSLVTLLAKDFPELGLKKENVMEMGWIQSVLWWANFDNGT--SPNVLLDRDLNSADFLKRKSDYVQKPIPKYSLNLLWKQMMELGKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTEIEEDRLSQATSLYSFMTPFVSKSPRSAYLNYRDVDIGINHHGEDSYAEGKVYGEKYFNGNFDRLVKVKTMVD 881
            GEDLFWAI GGGG S+GVVL YK+KLVPVP  VTVFR E+ +   A D+V+KWQ V P TD NLFMRML+QPVTR K  TVRAS+VAL+LG AD +V LL+K+FPELGLKKEN  EM W QS LWW N  N T   P V LDR+L+++ F KRKSDYV   IPK  +  L+K+M+ELGKIGLVFNPYGGKMAE+  +   FPHR   LFKIQYS++W +   EIE+  L+QA  LYSFMT FVSK+PRS+Y NYRDVDIG+N HG +SY EG+VYG KYF  NFDRLVK+KT VD
Sbjct:  229 GEDLFWAITGGGGGSYGVVLGYKVKLVPVPSVVTVFRVEQYMDSGAVDMVHKWQSVGPKTDPNLFMRMLIQPVTRKKVKTVRASVVALFLGRADEVVALLSKEFPELGLKKENCSEMTWFQSALWWDNRLNATQVDPKVFLDRNLDTSSFGKRKSDYVATAIPKKGIESLFKKMIELGKIGLVFNPYGGKMAEVAVNAKPFPHR-NKLFKIQYSVNWKENSAEIEKGYLNQAKVLYSFMTGFVSKNPRSSYFNYRDVDIGVNDHGANSYKEGEVYGRKYFGENFDRLVKIKTAVD 522          
BLAST of CK935589 vs. ExPASy Swiss-Prot
Match: RETO_ESCCA (Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.471e-43
Identity = 99/300 (33.00%), Postives = 168/300 (56.00%), Query Frame = 3
Query:    3 GEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLA-ENATDVVYKWQLVAPATDDNLFMRMLLQPVTRNKKPTVRASIVALYLGGADSLVTLLAKDFPELGLKKENVMEMGWIQSVLWWANFDNGTSPNVLLDRDLNSAD-FLKRKSDYVQKPIPKYSLNLLWKQMMELGKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTEIEEDRLSQATSLYSFMTPFVSKSPRSAYLNYRDVDIGINHHGEDSYAEGKV-----YGEKYFNGNFDRLVKVKTMVD 881
            GED+FWAIRGGGG  +G + A+KIKL+PVPE VTVFR  + +A + AT +++KWQ VA   +++  + +L        +  V  +++  + G      +     FPELGL +E+ +EM W +S  + A  +  +  N   +R L   +   K K D  ++P+P  +   L +++ +     +  N +GG+M++I +  T FPHR+G    ++Y ++W+    + + + L     +Y FM PFVSK+PR  Y+N+ D+D+G    G  +     +     +GE YF  N++RL++ KT++D
Sbjct:  213 GEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVL----GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLN---NRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLID 505          
BLAST of CK935589 vs. ExPASy Swiss-Prot
Match: RETO_PAPSO (Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 7.146e-43
Identity = 107/304 (35.20%), Postives = 168/304 (55.26%), Query Frame = 3
Query:    3 GEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLA-ENATDVVYKWQLVAPATDDNLFMRMLLQPVTRNKKPTVRASIVALYLGGADSLVTLLAKDFPELGLKKENVMEMGWIQSVLWWANFDNGTSPNVLLDRDLNSAD-FLKRKSDYVQKPIPKYSLNLLWKQMMELGKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTEIEEDRLSQ----ATSLYSFMTPFVSKSPRSAYLNYRDVDI-GINHHGEDSYAE----GKVYGEKYFNGNFDRLVKVKTMVD 881
            G+D+FWAIRGGGG  +G + A+KIKL+PVPE +TVFR  + +  E+A+ +++KWQ VA   D++ F   +L  V  N         + L+LG  D+  T++ + FPELGL  +   EM W +S+ + +  D  +  N   +R L   +   K K D+ +  +P        + + E     +  N +GGKM+EI    T FPHR G     +Y I+W+    + EE ++ +        Y ++ PFVSK PR  Y+N+ D+DI GI+   + S        + +GE+YF+ N++RLVK KT++D
Sbjct:  217 GDDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKLTVFRVTKNVGIEDASSLLHKWQYVADELDED-FTVSVLGGVNGN---DAWLMFLGLHLGRKDAAKTIIDEKFPELGLVDKEFQEMSWGESMAFLSGLDTISELN---NRFLKFDERAFKTKVDFTKVSVPLNVFRHALEMLSEQPGGFIALNGFGGKMSEISTDFTPFPHRKGTKLMFEYIIAWN----QDEESKIGEFSEWLAKFYDYLEPFVSKEPRVGYVNHIDLDIGGIDWRNKSSTTNAVEIARNWGERYFSSNYERLVKAKTLID 509          
BLAST of CK935589 vs. ExPASy Swiss-Prot
Match: YGAK_BACSU (Uncharacterized FAD-linked oxidoreductase ygaK OS=Bacillus subtilis GN=ygaK PE=3 SV=4)

HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 69/294 (23.47%), Postives = 124/294 (42.18%), Query Frame = 3
Query:    9 DLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLAENATDVVYKWQLVAPATDDNLFMRMLLQPVTRNKKPTVRASIVALYLGGADSLVTLLAKDFPELGLKKENVMEMGWIQSVLWWANFDNGTSPNVLLDRDLNSADFLKRKSDYVQKPIPKYSLNLLWKQMMELG---KIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTEIEEDRLSQATSLYSFMTPFVSKSPRSAYLNYRDVDIGINHHGEDSYAEGKVYGEKYFNGNFDRLVKVKTMVD 881
            DLFWA +GGGG +FG+V +   K VP+ + V++F +     ++  +V   WQ  AP TDD L   +   P     K   R   +  ++G    L  LL K   + G     +++       + + N   G  P             +KR   +++KP+ + +++ + K  +E        +     GG    +   +TAF +R   +   +Y  +W+ PG + +  R  +       +   +SK     Y+N+ D++I             + +   Y+  N +RL +VKT  D
Sbjct:  178 DLFWASQGGGGGNFGIVTSMTFKAVPISQ-VSIF-SITWGWDDFEEVYNTWQNWAPYTDDRLTSSIEFWP-----KEVNRIEALGQFVGPKTELKKLL-KPLLKAGSPTSGMVKTTPFIEAVTFFNSPGGNQPQK-----------MKRSGSFIEKPLSERAISTI-KHFLEHAPNQNASVWQQALGGAAGRVAPDQTAFYYRDA-IIAQEYLTNWTSPGEKRQNVRWIEG------LRTSLSKETMGDYVNWPDIEI-------------RNWPRTYYGENVERLRRVKTTYD 431          
The following BLAST results are available for this feature:
BLAST of CK935589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RETOL_ARATH4.857e-10865.42Reticuline oxidase-like protein OS=Arabidopsis tha... [more]
RETO_ESCCA5.471e-4333.00Reticuline oxidase OS=Eschscholzia californica GN=... [more]
RETO_PAPSO7.146e-4335.20Reticuline oxidase OS=Papaver somniferum GN=BBE1 P... [more]
YGAK_BACSU3.824e-1223.47Uncharacterized FAD-linked oxidoreductase ygaK OS=... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004554_A10 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935589 ID=CK935589; Name=CK935589; organism=Citrus sinensis; type=EST; length=882bp
GGGGGGAGGATCTTTTTTGGGCGATCAGAGGCGGCGGCGGAGCGAGCTTC
GGTGTTGTGCTGGCTTATAAGATCAAGTTGGTTCCCGTTCCGGAGACGGT
TACCGTGTTTAGAGCTGAAAGGCTTTTGGCTGAGAATGCAACGGATGTGG
TCTATAAATGGCAGTTGGTGGCGCCGGCCACGGATGATAATTTGTTTATG
AGAATGCTTTTGCAGCCTGTTACAAGAAACAAGAAGCCGACGGTCAGGGC
ATCGATTGTGGCGTTGTATTTAGGTGGTGCCGACAGTCTCGTGACTCTCC
TGGCCAAGGATTTTCCAGAACTGGGGCTGAAGAAAGAAAATGTCATGGAA
ATGGGTTGGATTCAATCAGTTCTTTGGTGGGCCAATTTCGATAATGGAAC
TTCACCAAATGTTTTGCTGGACAGAGACCTTAACTCCGCTGATTTCCTGA
AGAGGAAATCTGATTATGTTCAGAAACCGATTCCAAAATATTCCCTGAAT
TTGCTGTGGAAACAAATGATGGAATTGGGGAAAATTGGGTTGGTCTTCAA
TCCTTATGGAGGAAAAATGGCTGAAATTCCAGCATCAGAGACTGCATTTC
CACACAGAGCAGGAAACTTGTTCAAGATTCAGTATTCAATAAGTTGGAGT
GATCCTGGAACTGAGATTGAGGAGGACAGACTCTCTCAGGCGACAAGCCT
TTACAGTTTTATGACTCCATTTGTGTCAAAGAGTCCACGAAGTGCTTATT
TGAATTATAGGGATGTGGATATCGGTATCAATCATCATGGTGAAGATAGC
TATGCTGAGGGGAAAGTGTATGGGGAGAAGTATTTTAATGGTAATTTTGA
TAGGTTGGTGAAAGTTAAGACCATGGTTGATT
back to top