CK935596

Overview
NameCK935596
Unique NameCK935596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935596_ssr528 microsatellite CK935596_ssr528:528..539. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1832 contig Csv1_Contig1832:1..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935596 vs. ExPASy Swiss-Prot
Match: YH75_SCHPO (Vesicle-associated membrane protein-associated protein C16G5.05c OS=Schizosaccharomyces pombe GN=SPBC16G5.05c PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.831e-15
Identity = 43/102 (42.16%), Postives = 62/102 (60.78%), Query Frame = 1
Query:  130 LQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVSPRSTCDIIVTMQAQKEAP-PDMQCKDKFLLQSVKTNDGTTAKDINAEMF---NKEAGHVVEECKLRVIY 423
            + + N     V FKVKTT PK YCVRPN+G + P+ST ++ V +QA KE P PD +C+DKFL+QS+   D  T+   N   F    ++ G  + + K+R +Y
Sbjct:   23 ISVHNPNPEPVIFKVKTTAPKHYCVRPNSGKIEPKSTVNVQVLLQAMKEEPAPDFKCRDKFLIQSMAIGDADTSNVENYHEFWTEMEKQGRSIFDRKIRCVY 124          
BLAST of CK935596 vs. ExPASy Swiss-Prot
Match: YDFC_SCHPO (Uncharacterized protein C17C9.12 OS=Schizosaccharomyces pombe GN=SPAC17C9.12 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.714e-13
Identity = 41/111 (36.94%), Postives = 61/111 (54.95%), Query Frame = 1
Query:   94 FPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVSPRSTCDIIVTMQAQKEAP-PDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIY 423
            FP  L + + C L+L N     + FKVKTT PK+YCVRPN G +   S   + V +Q     P P  +C+DKFL+QS +        DI A+++ + +   + E K+R +Y
Sbjct:   11 FPRPLTRLVKCDLELRNTAPYPIGFKVKTTAPKQYCVRPNGGRIEANSAVSVEVILQPLDHEPAPGTKCRDKFLVQSTELKPELQGMDI-ADIWTQVSKANISERKIRCVY 120          
BLAST of CK935596 vs. ExPASy Swiss-Prot
Match: VP33_APLCA (Vesicle-associated membrane protein/synaptobrevin-binding protein OS=Aplysia californica PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.514e-12
Identity = 38/93 (40.86%), Postives = 57/93 (61.29%), Query Frame = 1
Query:   61 ELLSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVSPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTND 336
            + L +EP  EL+F       ++  L+LSN TD  + FKVKTT PK+YCVRPN+GI+ P+++  + V +Q     P +   K KF++QS+   D
Sbjct:    6 QALILEPAGELRFKGPFTDVVTADLKLSNPTDRRICFKVKTTAPKRYCVRPNSGILEPKTSIAVAVMLQPFNYDPNEKN-KHKFMVQSMYAPD 97          
BLAST of CK935596 vs. ExPASy Swiss-Prot
Match: VAPA_PONAB (Vesicle-associated membrane protein-associated protein A OS=Pongo abelii GN=VAPA PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.228e-11
Identity = 40/115 (34.78%), Postives = 68/115 (59.13%), Query Frame = 1
Query:   79 PLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVSPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIY 423
            P +LKF       ++ +L+L N +D  V FKVKTT P++YCVRPN+GI+ P ST  + V +Q   +  P+ + K KF++Q++     T+  D+ A ++ +     + + KLR ++
Sbjct:   20 PTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVMLQ-PFDYDPNEKSKHKFMVQTIFAPPNTS--DMEA-VWKEAKPDELMDSKLRCVF 130          
BLAST of CK935596 vs. ExPASy Swiss-Prot
Match: VAPA_HUMAN (Vesicle-associated membrane protein-associated protein A OS=Homo sapiens GN=VAPA PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.228e-11
Identity = 40/115 (34.78%), Postives = 68/115 (59.13%), Query Frame = 1
Query:   79 PLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVSPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIY 423
            P +LKF       ++ +L+L N +D  V FKVKTT P++YCVRPN+GI+ P ST  + V +Q   +  P+ + K KF++Q++     T+  D+ A ++ +     + + KLR ++
Sbjct:   20 PTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVMLQ-PFDYDPNEKSKHKFMVQTIFAPPNTS--DMEA-VWKEAKPDELMDSKLRCVF 130          
BLAST of CK935596 vs. ExPASy Swiss-Prot
Match: VAPB_PIG (Vesicle-associated membrane protein-associated protein B OS=Sus scrofa GN=VAPB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.604e-11
Identity = 37/89 (41.57%), Postives = 59/89 (66.29%), Query Frame = 1
Query:   61 ELLSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVSPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSV 324
            ++LS+EP  ELKF       ++ +L+L N TD  V FKVKTT P++YCVRPN+GI+   ++ ++ V +Q   +  P+ + K KF++QS+
Sbjct:    6 QVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVSVMLQ-PFDYDPNEKSKHKFMVQSM 93          
BLAST of CK935596 vs. ExPASy Swiss-Prot
Match: VAPB_HUMAN (Vesicle-associated membrane protein-associated protein B/C OS=Homo sapiens GN=VAPB PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.604e-11
Identity = 37/89 (41.57%), Postives = 59/89 (66.29%), Query Frame = 1
Query:   61 ELLSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVSPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSV 324
            ++LS+EP  ELKF       ++ +L+L N TD  V FKVKTT P++YCVRPN+GI+   ++ ++ V +Q   +  P+ + K KF++QS+
Sbjct:    6 QVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVSVMLQ-PFDYDPNEKSKHKFMVQSM 93          
BLAST of CK935596 vs. ExPASy Swiss-Prot
Match: VAPB_BOVIN (Vesicle-associated membrane protein-associated protein B OS=Bos taurus GN=VAPB PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.604e-11
Identity = 37/89 (41.57%), Postives = 59/89 (66.29%), Query Frame = 1
Query:   61 ELLSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVSPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSV 324
            ++LS+EP  ELKF       ++ +L+L N TD  V FKVKTT P++YCVRPN+GI+   ++ ++ V +Q   +  P+ + K KF++QS+
Sbjct:    6 QVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVSVMLQ-PFDYDPNEKSKHKFMVQSM 93          
BLAST of CK935596 vs. ExPASy Swiss-Prot
Match: VAPB_RAT (Vesicle-associated membrane protein-associated protein B OS=Rattus norvegicus GN=Vapb PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 2.095e-11
Identity = 36/89 (40.45%), Postives = 59/89 (66.29%), Query Frame = 1
Query:   61 ELLSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVSPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSV 324
            ++LS+EP  ELKF       ++ +L+L N TD  V FKVKTT P++YCVRPN+G++   ++ ++ V +Q   +  P+ + K KF++QS+
Sbjct:    6 QVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGVIDAGASLNVSVMLQ-PFDYDPNEKSKHKFMVQSM 93          
BLAST of CK935596 vs. ExPASy Swiss-Prot
Match: VAPB_MOUSE (Vesicle-associated membrane protein-associated protein B OS=Mus musculus GN=Vapb PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.737e-11
Identity = 36/89 (40.45%), Postives = 59/89 (66.29%), Query Frame = 1
Query:   61 ELLSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVSPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSV 324
            ++LS+EP  ELKF       ++ +L+L N TD  V FKVKTT P++YCVRPN+G++   ++ ++ V +Q   +  P+ + K KF++QS+
Sbjct:    6 QVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTVPRRYCVRPNSGVIDAGASLNVSVMLQ-PFDYDPNEKSKHKFMVQSM 93          
The following BLAST results are available for this feature:
BLAST of CK935596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
YH75_SCHPO1.831e-1542.16Vesicle-associated membrane protein-associated pro... [more]
YDFC_SCHPO1.714e-1336.94Uncharacterized protein C17C9.12 OS=Schizosaccharo... [more]
VP33_APLCA5.514e-1240.86Vesicle-associated membrane protein/synaptobrevin-... [more]
VAPA_PONAB1.228e-1134.78Vesicle-associated membrane protein-associated pro... [more]
VAPA_HUMAN1.228e-1134.78Vesicle-associated membrane protein-associated pro... [more]
VAPB_PIG1.604e-1141.57Vesicle-associated membrane protein-associated pro... [more]
VAPB_HUMAN1.604e-1141.57Vesicle-associated membrane protein-associated pro... [more]
VAPB_BOVIN1.604e-1141.57Vesicle-associated membrane protein-associated pro... [more]
VAPB_RAT2.095e-1140.45Vesicle-associated membrane protein-associated pro... [more]
VAPB_MOUSE2.737e-1140.45Vesicle-associated membrane protein-associated pro... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_H10 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935596 ID=CK935596; Name=CK935596; organism=Citrus sinensis; type=EST; length=792bp
GGGGAAAAAAACAGCTTCGATCTTCTCTCTCAACATTGTTTTTGGAAAAT
GAGCACGGGAGAGCTTCTAAGCATCGAGCCTCTAGAGCTCAAATTTCCCT
TTGAACTGAAGAAGCAGATCTCTTGTTCTCTTCAATTGTCGAATAAAACC
GACAATTATGTAGCCTTTAAGGTGAAAACAACAAACCCAAAGAAGTACTG
TGTGCGTCCAAACACTGGGATTGTTTCGCCTCGATCTACATGTGATATTA
TAGTTACCATGCAAGCGCAAAAAGAGGCACCTCCTGACATGCAATGTAAG
GATAAGTTTCTTCTTCAGAGTGTAAAAACGAATGATGGAACAACCGCCAA
GGATATTAATGCTGAAATGTTTAATAAGGAGGCAGGGCATGTGGTTGAGG
AGTGCAAATTGAGAGTGATTTATGTTTCTCCACCGCAACCTCCATCTCCT
GTTCCTGAAGGATCGGAAGAAGGGTCTTCACCCAGGGGTTCTGTGTCAGA
CAATGGCCATGTGAATAGCGCTGAGTTTGCTGCTGCTGCCAGAGCGTTTA
CTGAGCGGATTGAACATCAAGACAAAAGCACAGAGGCCAGAGCTCTTATT
TCAAAGCTGAAAGATGAGAAAAATAATGCAGTCCAACAAAATAATAAGCT
TCGTCAGGATCTGGAACTCCTGAGGCGTGAAGGCAAAAAAAATCGTGGTG
GCGTATCATTCATATTTGTCATTTTGGTTGGCTTGGTTGGCATTGTTTTG
GGGTACGTGATGAAGAAATCATAAGTATCTGTCCACTACAGG
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