CK935598

Overview
NameCK935598
Unique NameCK935598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935598_ssr17 microsatellite CK935598_ssr17:17..31. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2614 contig Csv1_Contig2614:113..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935598 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.101e-19
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 2
Query:   95 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAE 235
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAE 45          

HSP 2 Score: 41.9726 bits (97), Expect = 5.101e-19
Identity = 13/17 (76.47%), Postives = 15/17 (88.24%), Query Frame = 1
Query:  241 GNCKCGPTCACVNCTCG 291
            G CKCGP+C+C NCTCG
Sbjct:   48 GKCKCGPSCSCTNCTCG 64          
BLAST of CK935598 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.426e-14
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 2
Query:   95 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAET 238
            MSD CGNCDCAD SQCVKKG+S   D VETD S++   VVM V AAE+
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNS--IDIVETDKSYIED-VVMGVPAAES 45          

HSP 2 Score: 37.3502 bits (85), Expect = 1.426e-14
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 1
Query:  241 GNCKCGPTCACVNCTC 288
            G CKCG +C CVNCTC
Sbjct:   47 GKCKCGTSCPCVNCTC 62          
BLAST of CK935598 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.853e-14
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 2
Query:  104 TCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAE 235
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAE 45          

HSP 2 Score: 35.8094 bits (81), Expect = 1.853e-14
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 1
Query:  241 GNCKCGPTCACVNCTCGS 294
            G CKCG  CAC +C CG+
Sbjct:   48 GKCKCGAACACTDCKCGN 65          
BLAST of CK935598 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 2.065e-12
Identity = 25/47 (53.19%), Postives = 30/47 (63.83%), Query Frame = 2
Query:   95 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAE 235
            MS  C NCDC+D SQC KKG S+    VET+   + T V+MD  AAE
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDT-VIMDAPAAE 46          

HSP 2 Score: 40.4318 bits (93), Expect = 2.065e-12
Identity = 13/16 (81.25%), Postives = 15/16 (93.75%), Query Frame = 1
Query:  241 GNCKCGPTCACVNCTC 288
            GNCKCGP+CACV+C C
Sbjct:   49 GNCKCGPSCACVDCKC 64          
BLAST of CK935598 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 4.539e-12
Identity = 24/38 (63.16%), Postives = 27/38 (71.05%), Query Frame = 2
Query:   95 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTV 208
            MSD CGNCDCAD+SQCVKKG+SY    VE + S    V
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFEEV 38          

HSP 2 Score: 34.6538 bits (78), Expect = 4.539e-12
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  241 GNCKCGPTCACVNCTCG 291
            G CKCG +C+C +C CG
Sbjct:   45 GGCKCGTSCSCTDCKCG 61          
BLAST of CK935598 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 4.539e-12
Identity = 24/38 (63.16%), Postives = 27/38 (71.05%), Query Frame = 2
Query:   95 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTV 208
            MSD CGNCDCAD+SQCVKKG+SY    VE + S    V
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFEEV 38          

HSP 2 Score: 34.6538 bits (78), Expect = 4.539e-12
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  241 GNCKCGPTCACVNCTCG 291
            G CKCG +C+C +C CG
Sbjct:   45 GGCKCGTSCSCTDCKCG 61          
BLAST of CK935598 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 5.861e-12
Identity = 27/47 (57.45%), Postives = 31/47 (65.96%), Query Frame = 2
Query:   95 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAE 235
            MS  C NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAE 46          

HSP 2 Score: 37.3502 bits (85), Expect = 5.861e-12
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 1
Query:  241 GNCKCGPTCACVNCTCG 291
            G CKCG  C+CV+CTCG
Sbjct:   49 GKCKCGTGCSCVSCTCG 65          
The following BLAST results are available for this feature:
BLAST of CK935598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
MT3_CARPA5.101e-1970.21Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_ACTDE1.426e-1466.67Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_MUSAC1.853e-1463.64Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_PRUAV2.065e-1253.19Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3A_ORYSJ4.539e-1263.16Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI4.539e-1263.16Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3_MALDO5.861e-1257.45Metallothionein-like protein type 3 OS=Malus domes... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004553_H12 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935598 ID=CK935598; Name=CK935598; organism=Citrus sinensis; type=EST; length=598bp
GCGGGGATATCATCACAGCAAAGCAAAGCAANNNTCGTACAATAAAGAGC
CCTCTATTTCCAGTTTTAAATTCCAAGTTCTAAGCTCAATCAACATGTCG
GACACCTGCGGCAACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAA
GGGAAGCAGCTATGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCA
GCACCGTTGTTGTCATGGACGTTCAGGCTGCTGAGACTAAGGTAACTGCA
AGTGCGGCCCCACCTGCGCTTGTGTGAACTGCACTTGTGGTAGTCACTAA
TAAGCAAACACATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATA
TTGTGGGGGTTAAGAATAATGTAAGGGTGATTAAAAAAAAAAGAAAAATT
CTCTACTTCGTTTTTATGATGGTCTACTACTAGTGTGTGGAGTGATGTGC
GTGTTGTGTCACCCATCACTCGTAATGTTTTGTGTTTCCTTCTTCATAAT
CATGTAATATATGGCCATGGCCATGACCGTGGCCTTGTGTGGTTTAATTT
TAATGTATTATTGTTAGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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