CK935605

Overview
NameCK935605
Unique NameCK935605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9394 contig Csv1_Contig9394:202..1030. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935605 vs. ExPASy Swiss-Prot
Match: AMYB_HORVU (Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 9.731e-47
Identity = 88/172 (51.16%), Postives = 120/172 (69.77%), Query Frame = 1
Query:  316 KGNGVPVFVMMPLDSVTMSNTVNRKKAMDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRMPVQCYSDFMRAFKDKFKDLL-GDTIVXIQV 828
            KGN V V+VM+PLD+V+++N   +   + A LR L  AGV+GVM+DVWWGLVE   P  Y+W  Y  L E+ ++ GLK+QA+MSFHQCGGNVGD+V+IP+P+WV +   +D D+ YTD  G RN EY++LG D  P+  GR  VQ Y+D+M +F++  KD L    IV I+V
Sbjct:    6 KGNYVQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSAYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTRNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKDFLDAGVIVDIEV 177          
BLAST of CK935605 vs. ExPASy Swiss-Prot
Match: AMYB_HORSP (Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.831e-46
Identity = 87/172 (50.58%), Postives = 120/172 (69.77%), Query Frame = 1
Query:  316 KGNGVPVFVMMPLDSVTMSNTVNRKKAMDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRMPVQCYSDFMRAFKDKFKDLL-GDTIVXIQV 828
            KGN V V+VM+PLD+V+++N   +   + A LR L  AGV+GVM+DVWWGLVE   P  Y+W  Y  L E+ ++ GLK+QA+MSFHQCGGNVGD+V+IP+P+WV +   +D D+ YTD  G RN EY++LG D  P+  GR  VQ Y+D+M +F++  K+ L    IV I+V
Sbjct:    6 KGNYVQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSAYKQLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTRNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKEFLDAGVIVDIEV 177          
BLAST of CK935605 vs. ExPASy Swiss-Prot
Match: AMYB_MEDSA (Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.130e-45
Identity = 79/170 (46.47%), Postives = 120/170 (70.59%), Query Frame = 1
Query:  322 NGVPVFVMMPLDSVTMSNTVNRKKAMDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRMPVQCYSDFMRAFKDKFKDLL-GDTIVXIQV 828
            N VPV+VM+PL  + ++N       +   L  L++AGV+GVM+DVWWG++E+  P  Y+W  Y  L ++ ++ GLK+QA+MSFHQCGGNVGD V+IPLPKWV++  + D D+ YT++ G+RN EY+S+G D  P+  GR  ++ YSD+M++F++   DLL  + I+ I+V
Sbjct:   11 NYVPVYVMLPLGVINVNNVFEDPDGLKEQLVQLRAAGVDGVMIDVWWGIIEQKGPKEYDWSAYKSLFQLVQKCGLKLQAIMSFHQCGGNVGDVVNIPLPKWVLDIGESDPDIFYTNRSGIRNQEYLSIGVDNKPIFHGRTAIEIYSDYMKSFRENMSDLLKSEVIIDIEV 180          
BLAST of CK935605 vs. ExPASy Swiss-Prot
Match: AMYB_ARATH (Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.315e-43
Identity = 83/171 (48.54%), Postives = 116/171 (67.84%), Query Frame = 1
Query:  322 NGVPVFVMMPLDSVTMSNTVNRKKAMDASLRALKS-AGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRMPVQCYSDFMRAFKDKFKDLL-GDTIVXIQV 828
            N VPV+VM+PL  V + N     + ++  L+ LK  AGV+GVM+DVWWG++E   P  Y+W  Y  L ++  R GLK+QA+MSFHQCGGNVGD V+IP+P+WV +  D D D+ YT++ G R+ EY+S+G D +P+  GR  VQ YSD+M +FK+   DL+    IV I+V
Sbjct:   12 NYVPVYVMLPLGVVNVENVFADPETLETQLKRLKEEAGVDGVMVDVWWGIIESKGPKQYDWTAYKTLFQLIARLGLKIQAIMSFHQCGGNVGDIVTIPIPQWVRDVGDNDPDIYYTNRKGTRDIEYLSIGVDNLPLFAGRTAVQLYSDYMSSFKENMADLIEAGVIVDIEV 182          
BLAST of CK935605 vs. ExPASy Swiss-Prot
Match: AMYB_IPOBA (Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4)

HSP 1 Score: 174.866 bits (442), Expect = 4.998e-43
Identity = 81/177 (45.76%), Postives = 120/177 (67.80%), Query Frame = 1
Query:  304 GLQEKGNGVPVFVMMPLDSVTMSNTVNRKKAMDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRMPVQCYSDFMRAFKDKFKDLL--GDTIVXIQV 828
            G+   GN V ++VM+PL  V   N    K+ ++  L+ +K+ G +GVM+DVWWG++E   P  Y+W  Y +L ++ K+ GLK+QA+MSFHQCGGNVGD+V IP+P+W+++  DK+ D+ YT++ G RN EY+SLG D   + +GR  ++ Y DFM +F+D   D L  GD IV I+V
Sbjct:    6 GVMPIGNYVSLYVMLPLGVVNADNVFPDKEKVEDELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWSAYRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQIGDKNPDIFYTNRAGNRNQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADFLKAGD-IVDIEV 181          
BLAST of CK935605 vs. ExPASy Swiss-Prot
Match: AMYB_VIGUN (Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.527e-43
Identity = 75/170 (44.12%), Postives = 118/170 (69.41%), Query Frame = 1
Query:  322 NGVPVFVMMPLDSVTMSNTVNRKKAMDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRMPVQCYSDFMRAFKDKFKDLL-GDTIVXIQV 828
            N VPV+VM+PL  V+++N     + +   L  L+ AGV+GVM+DVWWG++E+  P  Y+W  Y  L ++ +  GLK+QA+MSFHQCGGNVGD V+IP+P+WV++  + D D+ YT++ G R+ EY+++G D  P+  GR  ++ YSD+M++F++   D L  + I+ I+V
Sbjct:   11 NYVPVYVMLPLGVVSVNNVFEDPEGLKEQLVQLREAGVDGVMVDVWWGIIEQKGPKQYDWSAYKSLFQLVQECGLKLQAIMSFHQCGGNVGDVVNIPIPQWVLDIGESDPDIFYTNRSGTRDKEYLTIGVDNKPIFHGRTAIEVYSDYMKSFRENMSDFLKSEVIIDIEV 180          
BLAST of CK935605 vs. ExPASy Swiss-Prot
Match: AMYB_WHEAT (Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.231e-42
Identity = 82/170 (48.24%), Postives = 113/170 (66.47%), Query Frame = 1
Query:  322 NGVPVFVMMPLDSVTMSNTVNRKKAMDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRMPVQCYSDFMRAFKDKFKDLL-GDTIVXIQV 828
            N V V+VM+PLD V++ N   +   + A L+ L  AGV+GVM+DVWWGLVE   P  Y+W  Y  + ++    GLK+QA+MSFHQCGGNVGD V+IP+P+WV +    D D+ YT++ G RN EY++LG D  P+  GR  VQ Y+D+M +F++  K  L   TIV I+V
Sbjct:    8 NYVQVYVMLPLDVVSVDNKFEKGDEIRAQLKKLTEAGVDGVMIDVWWGLVEGKGPKAYDWSAYKQVFDLVHEAGLKLQAIMSFHQCGGNVGDVVNIPIPQWVRDVGATDPDIFYTNRGGTRNIEYLTLGVDDQPLFHGRTAVQMYADYMASFRENMKKFLDAGTIVDIEV 177          
BLAST of CK935605 vs. ExPASy Swiss-Prot
Match: AMYB_MAIZE (Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.526e-42
Identity = 77/170 (45.29%), Postives = 115/170 (67.65%), Query Frame = 1
Query:  322 NGVPVFVMMPLDSVTMSNTVNRKKAMDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRMPVQCYSDFMRAFKDKFKDLL-GDTIVXIQV 828
            N V V+VM+PLD +T+ NT  ++    A L+ L  AG +GVM+DVWWGLVE  +PG Y+W  Y  + ++ +  GLK+QA+MS HQCGGNVGD V+IP+P+WV +    + D+ YT++ G+ N EY++LG D  P+  GR  +Q Y+D+M++F++   D L    +V I+V
Sbjct:    8 NYVQVYVMLPLDVITVDNTFEKEDETRAQLKKLTEAGADGVMIDVWWGLVEGKEPGVYDWSAYRQVFKLVQEAGLKLQAIMSCHQCGGNVGDVVNIPIPQWVRDVGKSNPDIFYTNRSGLTNIEYLTLGVDDQPLFHGRTAIQLYADYMKSFRENMADFLDAGVVVDIEV 177          
BLAST of CK935605 vs. ExPASy Swiss-Prot
Match: AMYB_TRIRP (Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.217e-42
Identity = 73/170 (42.94%), Postives = 117/170 (68.82%), Query Frame = 1
Query:  322 NGVPVFVMMPLDSVTMSNTVNRKKAMDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRMPVQCYSDFMRAFKDKFKDLL-GDTIVXIQV 828
            N VPV+VM+PL  + ++N       +   L  L++AGV+GVM+DVWWG++E+  P  Y+W  Y  L ++ +  GLK+QA+MSFHQCGGNVGD V+IP+P+WV++  + D D+ YT++ G R+ EY+++G D  P+  GR  ++ YSD+M++F++   + L  + I+ I+V
Sbjct:   11 NYVPVYVMLPLGVINVNNVFEDPDGLKEQLVQLRAAGVDGVMVDVWWGIIEQKGPKEYDWSAYKSLFQLVQECGLKLQAIMSFHQCGGNVGDVVTIPIPQWVLDIGESDPDIFYTNRSGTRDKEYLTVGVDNKPIFHGRTAIEIYSDYMKSFRENMSEFLKSELIIDIEV 180          
BLAST of CK935605 vs. ExPASy Swiss-Prot
Match: AMYB_SOYBN (Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 7.979e-41
Identity = 74/170 (43.53%), Postives = 113/170 (66.47%), Query Frame = 1
Query:  322 NGVPVFVMMPLDSVTMSNTVNRKKAMDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEMAKRHGLKVQAVMSFHQCGGNVGDSVSIPLPKWVVEEVDKDQDLVYTDQWGMRNYEYISLGCDTIPVLKGRMPVQCYSDFMRAFKDKFKDLL-GDTIVXIQV 828
            N VPV+VM+PL  V + N       +   L  L++AGV+GVM+DVWWG++E   P  Y+W  Y  L ++ +  GL +QA+MSFHQCGGNVGD V+IP+P+WV++  + + D+ YT++ G RN EY+++G D  P+  GR  ++ YSD+M++F++   D L    I+ I+V
Sbjct:   11 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWRAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEV 180          
The following BLAST results are available for this feature:
BLAST of CK935605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
AMYB_HORVU9.731e-4751.16Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1[more]
AMYB_HORSP2.831e-4650.58Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV... [more]
AMYB_MEDSA3.130e-4546.47Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1[more]
AMYB_ARATH1.315e-4348.54Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 ... [more]
AMYB_IPOBA4.998e-4345.76Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4[more]
AMYB_VIGUN6.527e-4344.12Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=... [more]
AMYB_WHEAT4.231e-4248.24Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=... [more]
AMYB_MAIZE5.526e-4245.29Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1[more]
AMYB_TRIRP7.217e-4242.94Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1[more]
AMYB_SOYBN7.979e-4143.53Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_H02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935605 ID=CK935605; Name=CK935605; organism=Citrus sinensis; type=EST; length=829bp
GGGGGTACACTAGCTGGAACACCAATTCAGATGGACACAGGCGTCGTGTC
CGGCGATTCAACGGGGACGGTGAACGCATCGGCGGTGTGGAAACCGGTGT
CAACAGATTTGCGCTGTGCGATCCAAAAACCTGATCTGAAGGACACAATG
TCGCCACCAGTGAGCCCCTGCCGGTCGCCGGTACTGTCGAGCATGCGAGC
AGATCTGTCAGTGGCATGCCGCGCATTCGCGACAGAGTCTCCGACGGCGG
CAGCGGTGACGGAGTTCTCCGAGGAGGTTGGCGGCGAGATGTACAAGCAG
GGCGGCTTGCAAGAAAAGGGGAACGGAGTGCCGGTGTTCGTGATGATGCC
GCTGGACAGCGTGACGATGTCGAATACTGTGAATAGAAAGAAGGCGATGG
ACGCGAGTCTCAGGGCGTTGAAGAGCGCGGGAGTGGAAGGAGTTATGATG
GACGTGTGGTGGGGCCTGGTCGAGAGGGACCAGCCCGGCCATTACAATTG
GGGTGGCTATTCTGACTTGCTCGAAATGGCCAAACGACACGGCCTCAAGG
TTCAGGCCGTCATGTCGTTTCACCAGTGCGGCGGCAACGTCGGTGATTCC
GTCTCTATCCCTTTACCCAAGTGGGTTGTAGAAGAAGTTGACAAAGACCA
AGATCTTGTGTATACTGATCAATGGGGGATGAGGAATTACGAGTACATTT
CACTAGGTTGTGATACCATTCCGGTCCTGAAAGGTCGAATGCCTGTCCAG
TGTTACTCTGACTTCATGCGTGCCTTCAAAGACAAGTTCAAGGACCTTCT
TGGTGACACCATTGTGGNNATCCAAGTGG
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