CK935643

Overview
NameCK935643
Unique NameCK935643
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935643_ssr564 microsatellite CK935643_ssr564:564..578. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9024 contig Csv1_Contig9024:658..1304. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935643 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.042e-41
Identity = 82/120 (68.33%), Postives = 97/120 (80.83%), Query Frame = 2
Query:    5 PGYEKFLLNPQHTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 364
            P YE F+ NPQ++FL SLPTQLQATKVMAVQ+TLSTHSPDEEYL ++ ++  HW  D +V+  F+KFS  L +IEK IN RNKD +LK R GAG+PPYELLLP+S  GVTGRGIPNSISI
Sbjct:  798 PDYEMFMRNPQYSFLGSLPTQLQATKVMAVQETLSTHSPDEEYLIELREVQRHWFQDEQVVKYFNKFSEELVKIEKTINERNKDKKLKNRTGAGMPPYELLLPTSPHGVTGRGIPNSISI 917          
BLAST of CK935643 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.272e-31
Identity = 67/120 (55.83%), Postives = 85/120 (70.83%), Query Frame = 2
Query:    5 PGYEKFLLNPQHTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 364
            P +  F+ +PQ  F SS+P+ LQ TK MAV DTLSTHSPDEEY+G+  Q  S W  D E+++ F  FSA +  IEK I+ RN+D   + RCGAG+ PYEL+ PSS PGVT RG+PNS+SI
Sbjct:  808 PEFTSFIEDPQKYFFSSMPSLLQTTKFMAVVDTLSTHSPDEEYIGE-RQQPSIWTGDAEIVDAFYGFSAEIGRIEKEIDKRNRDPSRRNRCGAGVLPYELMAPSSEPGVTCRGVPNSVSI 926          
BLAST of CK935643 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.037e-29
Identity = 66/117 (56.41%), Postives = 81/117 (69.23%), Query Frame = 2
Query:   14 EKFLLNPQHTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 364
            +KF+  P+   L SLP+Q+QA KVMA  D LS+HSPDEEY+G+  +    W+ +P V   F+KFS  L+E E  I+ RN +   K RCGAGI PYELL P S PGVTGRGIPNSISI
Sbjct:  782 KKFMARPEEVLLQSLPSQMQAIKVMATLDILSSHSPDEEYMGEYAE--PAWLAEPMVKAAFEKFSGRLKEAEGTIDMRNNNPENKNRCGAGIVPYELLKPFSEPGVTGRGIPNSISI 896          
BLAST of CK935643 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.539e-29
Identity = 64/120 (53.33%), Postives = 82/120 (68.33%), Query Frame = 2
Query:    5 PGYEKFLLNPQHTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 364
            P Y  F+ +P+  + SS+P+  Q +K MAV DTLSTHSPDEEY+G+  Q  S W  D E++  F  F+A +  IEK I  RN D   + RCGAG+ PYELL+PSS PGVT RG+PNS+SI
Sbjct:  801 PEYASFISHPEKYYFSSMPSLAQTSKFMAVVDTLSTHSPDEEYIGE-RQQPSIWTGDAEIVEAFYGFAAEIGRIEKEIEKRNADPDRRNRCGAGVLPYELLVPSSEPGVTCRGVPNSVSI 919          
BLAST of CK935643 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 9.464e-27
Identity = 64/117 (54.70%), Postives = 78/117 (66.67%), Query Frame = 2
Query:   14 EKFLLNPQHTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 364
            E+FL NP        P+Q+QAT VMAV D LS+HS DEEYLG   +    W +D  V   +D F+A L+EIE +I+ RNKD +LK RCGAGI PY+L+ P S  GVTG GIPNS SI
Sbjct:  810 ERFLDNPDQALRECFPSQVQATVVMAVLDVLSSHSTDEEYLG--GEQTRPWNSDAAVQAAYDGFAARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSDSGVTGMGIPNSTSI 924          
BLAST of CK935643 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.108e-26
Identity = 63/119 (52.94%), Postives = 76/119 (63.87%), Query Frame = 2
Query:   11 YEKFLLNPQHTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVNQLHS-HWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 364
            Y  FL +P   FL+++P  L+ATK MAV DTLSTHSPDEEYLG+        W  D   +     F+A++   E+ I  RN D   K RCGAG+ PYELL PSS PGVT RG+PNSISI
Sbjct:  800 YAAFLADPHRFFLNAMPGVLEATKFMAVVDTLSTHSPDEEYLGEGRDEGGVPWTADEAAVAAHGMFAADVRRAEETIERRNADHGRKNRCGAGVLPYELLAPSSPPGVTCRGVPNSISI 918          
BLAST of CK935643 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.754e-26
Identity = 64/117 (54.70%), Postives = 77/117 (65.81%), Query Frame = 2
Query:   14 EKFLLNPQHTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 364
            E+FL NP        P+Q+QAT VMAV D LSTHS DEEYLG   +    W +D  V   +  F+A L+EIE +I+ RNKD +LK RCGAGI PY+L+ P S  GVTG GIPNS SI
Sbjct:  827 ERFLDNPDQALRECFPSQVQATVVMAVLDVLSTHSTDEEYLG--GEQTRPWNSDAAVQAAYAGFTARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSDAGVTGMGIPNSTSI 941          
BLAST of CK935643 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.193e-25
Identity = 58/120 (48.33%), Postives = 76/120 (63.33%), Query Frame = 2
Query:    5 PGYEKFLLNPQHTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 364
            P Y   + +P   FLS+LP+  Q T  M V DTLSTHS DEEYLG+  +    W  DP  L    +F+A++   E+ I  RN D   + RCGAG+ PYEL+ PSSGPG+T RG+PNS++I
Sbjct:  782 PEYAHLVADPHRFFLSALPSLTQTTTFMTVIDTLSTHSADEEYLGE--RPDEAWTADPAALAAAREFAADVRRAEEEIERRNADPSRRNRCGAGVLPYELMAPSSGPGITCRGVPNSVTI 899          
BLAST of CK935643 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.794e-24
Identity = 55/117 (47.01%), Postives = 76/117 (64.96%), Query Frame = 2
Query:   14 EKFLLNPQHTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 364
            ++F  +P+   L + P+Q QAT VM   D LSTHSPDEEY+G+  Q  + W N+P +   F++F   L+ +E +I+ RN +  LK R GAG+  YELL P+S  GVTG G+P SISI
Sbjct:  782 KEFYESPEKVLLKTYPSQKQATLVMVTLDLLSTHSPDEEYIGE--QQEASWANEPVINAAFERFKGKLQYLEGVIDERNVNITLKNRAGAGVVKYELLKPTSEHGVTGMGVPYSISI 896          
BLAST of CK935643 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.019e-22
Identity = 57/121 (47.11%), Postives = 73/121 (60.33%), Query Frame = 2
Query:    2 SPGYEKFLLNPQHTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 364
            +P +E+   NP   FL ++  QLQ    +++ + LSTHS DE YLGQ +     W  + E L  F+KF   ++EIEK I+ RN D  LK R G    PY LL PSS  GVTGRGIPNS+SI
Sbjct:  741 TPEFEELEKNPDKVFLKTITAQLQTLLGISLIEILSTHSSDEVYLGQRDS--KEWAAEKEALEAFEKFGEKVKEIEKNIDERNDDETLKNRTGLVKMPYTLLFPSSEGGVTGRGIPNSVSI 859          
The following BLAST results are available for this feature:
BLAST of CK935643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX6_ARATH1.042e-4168.33Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX4_ARATH8.272e-3155.83Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX23_HORVU2.037e-2956.41Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOX3_ARATH4.539e-2953.33Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOXC1_ORYSJ9.464e-2754.70Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX6_ORYSJ2.108e-2652.94Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOXC2_ORYSJ2.754e-2654.70Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOX5_ORYSJ5.193e-2548.33Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX2_ARATH9.794e-2447.01Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOX1_ARATH7.019e-2247.11Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004553_C03 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIF_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935643 ID=CK935643; Name=CK935643; organism=Citrus sinensis; type=EST; length=647bp
GAGTCCTGGTTATGAGAAATTCCTTTTAAACCCTCAGCATACTTTTTTGT
CTTCACTGCCCACTCAGCTTCAAGCAACTAAAGTGATGGCTGTCCAAGAC
ACTCTGTCCACTCACTCTCCTGATGAAGAGTATCTAGGTCAGGTGAACCA
GTTACACAGCCACTGGATCAATGACCCTGAAGTTTTGAATATGTTTGATA
AGTTCTCTGCTAATCTGGAGGAGATTGAAAAGATAATAAATACAAGAAAT
AAAGATTTCCGTCTTAAAGGCAGATGTGGTGCTGGCATTCCACCATATGA
ACTGCTTCTTCCTTCCTCTGGTCCGGGAGTAACTGGTCGAGGAATCCCCA
ATAGTATTTCTATCTGATGGACTTAGCTAAATTGAGACACTGGTAGATGC
CTTTTTGTCACTATCGGTTAGTGCATACCATTTTATTTCTGTGCTGTGCG
GTTGTATGGACCTTCAATAGATCTTTTGGGGTTCGGTATTTGATATTAAA
GCTCTGTAATTTGTGGGTAAAAGATATGATAGGACACAGAAAACTTGGAA
TATCATGATATTGGATCTGATCTGATCTTTGTAAAGCAACATATAAGATG
CTGCAACTTATATTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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